Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1350 ATGGCGGACAAGTACAACATGAAGAACCCCGCCGTGAAGCGGATTCTCCAGGAGGTCAAGGAGATGCAATCGAACCCTTCCGATGATTTCATGAGCCTCCCTCTCGAGGAGAATATATTTGAATGGCAATTTGCAATTAGGGGACCTGGTGATACTGAATTTGAGGGTGGTATTTTTCATGGAAGGATCCAGCTGCCTGCGGAATATCCATTCAAACCTCCTTCATTCATGTTGTTGACACCTAATGGTCGTTTTGAGACTCAAACCAAGATTTGCTTGAGCATTTCAAATCATCATCCTGAGCATTGGCAACCATCATGGAGTGTAAGGACTGCTCTCGTTGCCCTGATTGCTTTCATGCCCACCAACCCAAATGGTGCATTGGGTTCATTAGACTACAAGAAAGAAGAGAGGCGCGCCTTAGCCATCAAGTCCCGTGAAGCATCTCCCAAATTTGGGACTCCTGAACGTCAAAGACTGATTGATGAGATACATGAGTATATGCTAAGCAAGGCACCCCCTGTCCCTCAAGTTAGCCCCACACAGGCTTCTGAAGAACAACCCCCAATTGAGGAGGACCAGACCCAGGTTCAGTTGCATAATCCTGAGGCTTTGCCTGCAGGAGAGGTGATTCCAGATCAATCAGTTGACAGAATAATTGAAGAACAAGAAGTCACCGTCAATGCTAATCCTAACCCTTCTGAAGTTGAAGCTTCAACAGAGACTCCATCTAATGTCGTCTCAAGCAATCAGTTGCTCCAAAACTCGGAGACAACCAGGGGTCAAAATCTGAAACCAGAGACAAGGGTTCAAAAACCTGATGATCGATTATTCACATGGGCTGCTATTGGACTTACCATCGCAATTGTAGTCCTTTTGCTGAAAAAGTTCATTAAATCTACAGAACATGGTGCAGTTTTCATGGATGGATCTTAA 936 0.4541 MADKYNMKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIFHGRIQLPAEYPFKPPSFMLLTPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPNGALGSLDYKKEERRALAIKSREASPKFGTPERQRLIDEIHEYMLSKAPPVPQVSPTQASEEQPPIEEDQTQVQLHNPEALPAGEVIPDQSVDRIIEEQEVTVNANPNPSEVEASTETPSNVVSSNQLLQNSETTRGQNLKPETRVQKPDDRLFTWAAIGLTIAIVVLLLKKFIKSTEHGAVFMDGS* 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1350 311 MobiDBLite consensus disorder prediction 175 195 - -
Lja4g1350 311 SUPERFAMILY UBC-like 11 134 IPR016135 -
Lja4g1350 311 CDD UBCc 12 151 IPR000608 -
Lja4g1350 311 Gene3D Ubiquitin Conjugating Enzyme 2 198 IPR016135 -
Lja4g1350 311 MobiDBLite consensus disorder prediction 227 266 - -
Lja4g1350 311 Pfam Ubiquitin-conjugating enzyme 14 125 IPR000608 -
Lja4g1350 311 MobiDBLite consensus disorder prediction 227 268 - -
Lja4g1350 311 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 6 311 - -
Lja4g1350 311 SMART ubc_7 13 173 - -
Lja4g1350 311 MobiDBLite consensus disorder prediction 172 195 - -
Lja4g1350 311 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 10 165 IPR000608 -
Lja4g1350 311 PANTHER BNAC01G21910D PROTEIN 6 311 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1350 Lja-Chr4 12105437 12107615 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1350 1 309 Miscellaneous Gene Families AT3G17000 64.263 8.60e-139 393
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1350 K10578 - gmx:100804054 513.072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1350 4 12105437 12107615 Lja4g1350 4 12105437 12107615 ECH