LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja4g1345	ATGAGCTCCATGAAATTTTGCCGCCGATGCAACAACATTCTGTACCCTAAAGAGGACACGGAGCAGAAGGTTCTCTACTACGCTTGCCGCCACTGCAACCACCAGGAGATTGCAGATGATAACATTGTCTACAGAAATCAGATACGCCAATCTGTTGGACGGAACCCGCAAGCAGAGCAAAATGTTGCTGCAGATCCAACTCTTCCCCGCACCAAGTCTGTTCGTTGTTCTCAATGCAATCATGGAGAAGCTGTCTTTTTCCAGACAACAACTAGAGGGGAAGAAGGCACCACACTCGTTTTTGTTTGCTGCAACCCAACCTGTGGCCACCGATGGAGAGACTAG	345	0.4899	MSSMKFCRRCNNILYPKEDTEQKVLYYACRHCNHQEIADDNIVYRNQIRQSVGRNPQAEQNVAADPTLPRTKSVRCSQCNHGEAVFFQTTTRGEEGTTLVFVCCNPTCGHRWRD*	115

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lja4g1345	114	Pfam	Transcription factor S-II (TFIIS)	75	113	IPR001222	GO:0003676\|GO:0006351\|GO:0008270
	Lja4g1345	114	PANTHER	DNA-DIRECTED RNA POLYMERASE	1	114	IPR012164	GO:0006351
	Lja4g1345	114	SUPERFAMILY	Zinc beta-ribbon	60	114	-	-
	Lja4g1345	114	PANTHER	DNA-DIRECTED RNA POLYMERASE SUBUNIT	1	114	-	-
	Lja4g1345	114	SMART	rpol9cneu	5	58	IPR001529	GO:0006351
	Lja4g1345	114	SUPERFAMILY	Zinc beta-ribbon	1	48	-	-
	Lja4g1345	114	ProSiteProfiles	Zinc finger TFIIS-type profile.	72	113	IPR001222	GO:0003676\|GO:0006351\|GO:0008270
	Lja4g1345	114	SMART	Cys4_2	74	114	IPR001222	GO:0003676\|GO:0006351\|GO:0008270
	Lja4g1345	114	Pfam	RNA polymerases M/15 Kd subunit	4	36	IPR001529	GO:0006351
	Lja4g1345	114	Gene3D	-	47	114	-	-
	Lja4g1345	114	PIRSF	RNApol_RpoM	4	114	IPR012164	GO:0006351
	Lja4g1345	114	Gene3D	-	1	46	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lja4g1345	Lja-Chr4	12070602	12074266	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lja4g1345	K03017		-	nnu:104605091	202.986

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lja4g1345	4	12070602	12074266	Lja4g1345	4	12070602	12074266	ECH
	Lja4g1345	4	12070602	12074266	Lja6g2307	6	52001942	52004860	PCT