Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1341 ATGCAGTGCTCACTCTCACTCCCCTTCTCTCCCGCCTCCTCCTCTGCCGCCACATCTTCCAGATCGCACTCCTCCTTTCCCATCTCCACCGGCAAGCCTCTCAATCTCCGCTTCTGCGGTCTCAGGCGCGAGGCGTTAGGTTTAGGTTTCACCACCTCACTCAACCGCCGCTGCCCCCAGCTTCCCAGCCGCCAACACGCCACCACTGTTTCCGCCGCTCTCTCCGACAATGGCAGCTCTTCCAAATCGTTCGATTATGATTTGTTGATCATTGGTGCTGGTGTTGGTGGCCATGGCGCTGCGCTTCATGCTGTTGAGAAGGGTCTGAAAACAGCTGTTGTAGAGGGAGACGTGGTGGGAGGGACATGTGTGAACAGAGGATGTGTTCCTTCGAAAGCTCTTTTGGCGGTCAGTGGTCGCATGCGAGAATTGAAGAGCGATCATCACCTGAAGTCCTTGGGATTACAGGTTTCTGCTGCTGGGTATGACAGACAAGCAGTCGCTGATCATGCTAACAATCTTGCATCTAAAATCCGGAGTAATTTGACCAACTCAATGAAGGCGCTTGGAGTAGACATACTTACTGGGGTTGGGACTATATTGGGTTCCCAAAAGGTGAAAATTGGCTCTTCAAACATAGTAACTGCAAAAGATATCATCATTGCAACTGGTTCTGTTCCTTTCGTTCCTAAGGGTATTGAAGTTGATGGGAAGACTGTGATTACTAGTGACCATGCACTCAAACTGGAGTCTGTTCCAGATTGGATAGCAATTGTAGGAAGTGGTTATATTGGCCTTGAATTCAGTGATGTATATACAGCACTTGGAAGTGAGGTTACTTTTATTGAAGCTTTAGATCAGCTTATGCCTGGATTTGATCCTGAAATCAGCAAGTTGGCTCAGAGGGTTCTCATAAATCCCCGGAATATTGACTATCATACTGGAGTCTTTGCAACCAAGATCACTCCTGCAAGGGATGGAAAACCTGTCTTGATTGAGCTTATTGATGCAAAGACTAAAGAACCGAAGGACACTTTGGAGGTGGATGCTGCATTAATAGCAACTGGCAGGGCTCCTTTCACGCAAGGTCTTGGGCTGGAGAATATTGATGTGGTAACACAGCGTGGTTTTGTTCCGGTGGATGAGCGCATGCGAGTAGTTGATGCAAATGGCAAGCTGGTTCCTCATTTGTACTGTATTGGTGATGCAAATGGCAAGATGATGCTTGCTCATGCTGCCAGTGCACAAGGAATTTCAGTGGTCGAACAAGTCACTGGAAGAGATCATGTGCTCAACCATCTAAGTATCCCCGCTGCTTGTTTTACTCATCCTGAAATCAGCATGGTTGGATTGACAGAGCCTCAAGCAAGGGAGAGAGGTGAAAAAGAGGGGTTTGAAGTAAGTGTTGCCAAAACAAGTTTTAAAGCTAACACAAAAGCCCTAGCAGAAAATGAAGGGGAAGGGATTGCCAAGTTGATATACAGACCTGACAACGGAGAGATACTAGGAGTTCATATTTTTGGTTTGCATGCAGCAGATCTCATCCATGAAGCATCCAATGCAATAGCATTAGGGACACGTATTCAGGATCTAAAACTTGCAGTTCATGCACATCCAACTTTGTCTGAGGTTCTTGATGAGCTATTTAAATCAGCAAAGGTTAAAGAACAAGCTTCTAGCCCAGTAAGTGAACCAGTTGCAGTCTAA 1707 0.4663 MQCSLSLPFSPASSSAATSSRSHSSFPISTGKPLNLRFCGLRREALGLGFTTSLNRRCPQLPSRQHATTVSAALSDNGSSSKSFDYDLLIIGAGVGGHGAALHAVEKGLKTAVVEGDVVGGTCVNRGCVPSKALLAVSGRMRELKSDHHLKSLGLQVSAAGYDRQAVADHANNLASKIRSNLTNSMKALGVDILTGVGTILGSQKVKIGSSNIVTAKDIIIATGSVPFVPKGIEVDGKTVITSDHALKLESVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEISKLAQRVLINPRNIDYHTGVFATKITPARDGKPVLIELIDAKTKEPKDTLEVDAALIATGRAPFTQGLGLENIDVVTQRGFVPVDERMRVVDANGKLVPHLYCIGDANGKMMLAHAASAQGISVVEQVTGRDHVLNHLSIPAACFTHPEISMVGLTEPQARERGEKEGFEVSVAKTSFKANTKALAENEGEGIAKLIYRPDNGEILGVHIFGLHAADLIHEASNAIALGTRIQDLKLAVHAHPTLSEVLDELFKSAKVKEQASSPVSEPVAV* 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1341 568 ProSitePatterns Pyridine nucleotide-disulphide oxidoreductases class-I active site. 120 130 IPR012999 GO:0016668
Lja4g1341 568 PRINTS FAD-dependent pyridine nucleotide reductase signature 348 364 - -
Lja4g1341 568 PRINTS FAD-dependent pyridine nucleotide reductase signature 88 107 - -
Lja4g1341 568 PRINTS FAD-dependent pyridine nucleotide reductase signature 216 234 - -
Lja4g1341 568 PRINTS FAD-dependent pyridine nucleotide reductase signature 382 404 - -
Lja4g1341 568 PRINTS FAD-dependent pyridine nucleotide reductase signature 255 273 - -
Lja4g1341 568 Gene3D - 435 559 IPR016156 GO:0016491|GO:0050660
Lja4g1341 568 PRINTS Pyridine nucleotide disulphide reductase class-I signature 349 363 - -
Lja4g1341 568 PRINTS Pyridine nucleotide disulphide reductase class-I signature 119 134 - -
Lja4g1341 568 PRINTS Pyridine nucleotide disulphide reductase class-I signature 219 228 - -
Lja4g1341 568 PRINTS Pyridine nucleotide disulphide reductase class-I signature 501 516 - -
Lja4g1341 568 PRINTS Pyridine nucleotide disulphide reductase class-I signature 87 109 - -
Lja4g1341 568 PRINTS Pyridine nucleotide disulphide reductase class-I signature 432 453 - -
Lja4g1341 568 PRINTS Pyridine nucleotide disulphide reductase class-I signature 523 543 - -
Lja4g1341 568 PRINTS Pyridine nucleotide disulphide reductase class-I signature 255 280 - -
Lja4g1341 568 PRINTS Pyridine nucleotide disulphide reductase class-I signature 397 404 - -
Lja4g1341 568 Gene3D - 86 423 IPR036188 -
Lja4g1341 568 PANTHER DIHYDROLIPOAMIDE DEHYDROGENASE 23 559 - -
Lja4g1341 568 PIRSF Hg-II_reductase_MerA 53 551 IPR001100 GO:0016491
Lja4g1341 568 TIGRFAM lipoamide_DH: dihydrolipoyl dehydrogenase 86 554 IPR006258 GO:0004148|GO:0050660
Lja4g1341 568 Pfam Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 436 547 IPR004099 GO:0045454
Lja4g1341 568 Gene3D - 228 355 IPR036188 -
Lja4g1341 568 Pfam Pyridine nucleotide-disulphide oxidoreductase 86 417 IPR023753 GO:0016491
Lja4g1341 568 PANTHER DISULFIDE OXIDOREDUCTASE 23 559 - -
Lja4g1341 568 MobiDBLite consensus disorder prediction 1 27 - -
Lja4g1341 568 SUPERFAMILY FAD/NAD-linked reductases, dimerisation (C-terminal) domain 435 549 IPR016156 GO:0016491|GO:0050660
Lja4g1341 568 SUPERFAMILY FAD/NAD(P)-binding domain 75 426 IPR036188 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1341 Lja-Chr4 12037061 12043037 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1341 1 560 Acyl Lipid Metabolism Gene Families AT3G16950 81.883 0.0 916
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1341 K00382 - gmx:100782004 963.755
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1341 4 12037061 12043037 Lja4g1341 4 12037061 12043037 ECH