Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1328 ATGGGTGTGTTCACATTTGAGGACGAAACCACTTCCCCTGTGGCTCCTGCTAAGCTTTTCAAAGCTCTTGTTAAAGATGCTGATGAAATCCTCCCAAAGGCTGTTGATGCCATCCAGAGTGTTGAAACTGTTGAGGGAAATGGTGGCCCTGGAACCATCAAGAAACTCACTGTTAATGAGGATGAGGCTAACTTGGTATATAACTACAGTTTAGTTGGGGGCTCAGAGTTCCCAGAGAATGTGGAGAAGATCACATTTGAGTCCAAATTGGTTGATGGACCCAATGGAGGGTCAATTGGGAAGCTGAAAGTGAAGTATCATAGCAAGGGAAATGCTGAGCCAAATGAAGCTGAGGTTAAGGAAGGAAAGGCCAGGGGTGATGCACTTTTCAAGGCCATTGAAGGTTATCTATCCATCCCCCAACTTTTCAAAGCTCTTGTTAAAGATGCTGATGAAATCCTCCCAAAGGCTGTTGATGCCATCCAGAGTGTTGAAACTGTTGAGGGAAATGGTGGCCCTGGAACAATCAAGAAACTCACTATTAATGAGGGTGGGAAAAGCAACTATGTGTTGAACAAGATTGAAGCAATAGATGAGGCTAACTTGGTATATAACTACAGTTTAGTTGGGGGCTCAGAGTTCCCAGAGAATGTGGAGAAGATCACATTTGAGTCCAAATTGGTTGATGGACCCAATGGAGGGTCAATTGGGAAGCTGAAAGTGAAGTATCATAGCAAGGGAAATGCTGAGCCAAATGAAGCTGAGGTTAAGGAAGGAAAGGCCAGGGGTGATGCACTTTTCAAGGCCATTGAAGGTTATGTTTTGAACCATCCTGAATACAACTGA 846 0.4421 MGVFTFEDETTSPVAPAKLFKALVKDADEILPKAVDAIQSVETVEGNGGPGTIKKLTVNEDEANLVYNYSLVGGSEFPENVEKITFESKLVDGPNGGSIGKLKVKYHSKGNAEPNEAEVKEGKARGDALFKAIEGYLSIPQLFKALVKDADEILPKAVDAIQSVETVEGNGGPGTIKKLTINEGGKSNYVLNKIEAIDEANLVYNYSLVGGSEFPENVEKITFESKLVDGPNGGSIGKLKVKYHSKGNAEPNEAEVKEGKARGDALFKAIEGYVLNHPEYN* 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1328 281 ProSitePatterns Pathogenesis-related proteins Bet v I family signature. 211 243 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Lja4g1328 281 CDD Bet_v1-like 4 137 - -
Lja4g1328 281 SUPERFAMILY Bet v1-like 138 281 - -
Lja4g1328 281 SUPERFAMILY Bet v1-like 2 137 - -
Lja4g1328 281 CDD Bet_v1-like 142 274 - -
Lja4g1328 281 Gene3D - 140 281 IPR023393 -
Lja4g1328 281 PANTHER - 1 137 - -
Lja4g1328 281 PANTHER - 141 280 - -
Lja4g1328 281 Gene3D - 1 139 IPR023393 -
Lja4g1328 281 ProSitePatterns Pathogenesis-related proteins Bet v I family signature. 74 106 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Lja4g1328 281 Pfam Pathogenesis-related protein Bet v 1 family 141 277 IPR000916 GO:0006952
Lja4g1328 281 Pfam Pathogenesis-related protein Bet v 1 family 1 137 IPR000916 GO:0006952
Lja4g1328 281 PANTHER ABA-RESPONSIVE PROTEIN 1 137 - -
Lja4g1328 281 PANTHER ABA-RESPONSIVE PROTEIN 141 280 - -
Lja4g1328 281 PRINTS Major pollen allergen Bet V1 signature 3 23 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Lja4g1328 281 PRINTS Major pollen allergen Bet V1 signature 26 36 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Lja4g1328 281 PRINTS Major pollen allergen Bet V1 signature 49 58 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1328 Lja-Chr4 11829703 11842144 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1328 - - rcu:8278794 224.557
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1328 4 11829703 11842144 Lja4g1328 4 11829703 11842144 ECH