Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1047 ATGAGAACAAGAAGAGGACCATGTTATCCTCAAAACATGTGCTCCGATGTAGGTTTCCCTAAGAGGAAGAACGATTTGCATACCCATATGCAAAAAGACTCCATTCTTACCCGGAAAAGGCAGAAGAAGTCACCGGCCGCCACCTCCGGTGACGACCATTTTGAGTCCTTACCGGATGACCTCGTTATCTCCATCTTGTCCAAGCTCAGCTCCTCCTCCACTTCCCCTTCTGATTTTGCCAGCGTTTTGATAACGTGTAAGAGATTAAACAGTTTAGGACTCAATTCTCTCGTGTTAGCAAAAGCCTCTTCGAGAATTTTCTCGATTAGGGCTAAAGATTGGTCGGAATCGGCGCATCGGTTTCTCAAACAGTGTGCAGATGCAGGGAATGTTGAAGCTTGTTACACTTTGGGCATGATTCGGTTCTACTGTTTGCAAAACAGGGGAAGCGGCGCGTCGTTGATGGCCAAGGCGGCGATTAGCTCTCACGCGCGTGCTCTCTACTCGCTCGCGGTGATTCAGTTCAACGGCAGCGGAGGGACCAAGAGTGACAAGGACCTCCGTGCCGGAGTGGCGCTTTGTGCCAGAGCGGCGTTTTTAGGACACATCGACGCGCTGCGTGAGATTGGCCACTGCTTGCAGGACGGGTACGGCTGCCGGAAGAATATTATAGAGGGGCGGCGTTTTCTTATTGAAGCAAACGCCCGGGAGCTCGCCGCCGTGATGTCCGCCGCGGATGCTAGGTTGTCAGCCTCCGACGCCGCTGTGAGCCGGTTGGTGACATGGAGCCTCCACCCGCAGCAACGGCACTTACCGTCGGTGGCGCCGCTGCTGAGCGACTTCGGGTGGAACGTGCCGGAGCCGGAGCCTCACCCGGCGAACCGGTTCATGACTGAGTGGTTCGCGGCGAAGGATGATGTTCCAGGGCCGGGGTTAAGTCTCTGTTCGCACATGGGCTGCGGTCGGCCGGAGACGAGGAATCGTGAGTTCCGGCGGTGCTCGGTGTGCGGCACGGTGAACTACTGCTCGCGCGCGTGTCAGGCGCTGGATTGGAAGCTCCGGCACAAGGTGGAGTGTGCTGCCCCCATGGAGCGGTTGCTTGATGATGACGGCGATGACGCCGGGGAAGGCGTCGGTGACGGCGAGGTGGAGGTTATGGAGGATAGTTAG 1170 0.5684 MRTRRGPCYPQNMCSDVGFPKRKNDLHTHMQKDSILTRKRQKKSPAATSGDDHFESLPDDLVISILSKLSSSSTSPSDFASVLITCKRLNSLGLNSLVLAKASSRIFSIRAKDWSESAHRFLKQCADAGNVEACYTLGMIRFYCLQNRGSGASLMAKAAISSHARALYSLAVIQFNGSGGTKSDKDLRAGVALCARAAFLGHIDALREIGHCLQDGYGCRKNIIEGRRFLIEANARELAAVMSAADARLSASDAAVSRLVTWSLHPQQRHLPSVAPLLSDFGWNVPEPEPHPANRFMTEWFAAKDDVPGPGLSLCSHMGCGRPETRNREFRRCSVCGTVNYCSRACQALDWKLRHKVECAAPMERLLDDDGDDAGEGVGDGEVEVMEDS* 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1047 389 ProSiteProfiles Zinc finger MYND-type profile. 317 359 IPR002893 -
Lja4g1047 389 MobiDBLite consensus disorder prediction 368 389 - -
Lja4g1047 389 Pfam MYND finger 320 359 IPR002893 -
Lja4g1047 389 SUPERFAMILY HIT/MYND zinc finger-like 314 361 - -
Lja4g1047 389 MobiDBLite consensus disorder prediction 369 389 - -
Lja4g1047 389 SUPERFAMILY HCP-like 116 233 - -
Lja4g1047 389 Gene3D - 311 364 - -
Lja4g1047 389 PANTHER OSJNBA0044M19.1 PROTEIN 1 376 - -
Lja4g1047 389 PANTHER MYND DOMAIN-CONTAINING 1 376 IPR044508 -
Lja4g1047 389 MobiDBLite consensus disorder prediction 34 53 - -
Lja4g1047 389 Gene3D Tetratricopeptide repeat domain 98 263 IPR011990 GO:0005515
Lja4g1047 389 SUPERFAMILY F-box domain 43 108 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1047 Lja-Chr4 8978769 8980526 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1047 - - gmx:100798174 511.146
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1047 4 8978769 8980526 Lja4g1047 4 8978769 8980526 ECH