Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1041 ATGGAAGAAGGGGTTGCCATGCTTCGGCACCTCATCGGACAGTTGAAGCATCTCTCGGAGTCGGACCCCTCACAATCTCCTTCATTCATCCTTCTGCAACATCACACTAATCCTCAACCGCCACCCAGATGGTCCTTCTTTGACATTGATGATAACTCCGTAGATGACTTCTGTGACCTTGTAATGACAGCTGGAAAGTCTGCAAGTTTCAGTACAATGGACCTTGTAAAGCATCCGTCTACTAAGAAGTGTCGAAGAGATAGGAGCAAGGAAAAGTCATCTAAAAGATCCTCTGTGACTGAAGCTATGGAAGAACAAATTTGGAAAGATTTTCCTGAAGATCTATTTGAAGCTGTGATTGCGCGACTTCCCATTGCCACATTCTTCCGCTTCCGCTCTGTATGCCGAAGATGGAATTCCTTGCTGGCCTCTGAAAGTTTTTCTCAGCACTGTGCTCAAGTTCCACAAGCAAATCCATGGTTTTACACCATAACTCATGAACACGCAAACTCGGGAGCCATGTATGACCCTTCTGTGAAAAAATGGTATCATCTGACTATATCAACACTGCCCACAAAGTTGATTGTTTTACCAATGGCTTCTGCCGGGGGTCTAGTTTGCTTTCTTGACATTGGTCATCGAAACTTCTATGTTTGTAATCCACTGACTCAATCCTTCAAGGAGTTGCCGGCCCGGTCGGTTAAGGTCTGGTCTCGCATCGGTGTAGGGATGACAATAAATGGGAACTCCTACAAGATACTGTGGGTCACTTGTGATGGAGAGTATGAAATTTATGACTCAGTGGGAAAATCTTGGAGCCGTCAAGGAAACATGCCTGCAGGTATTAAACTTCCGTTATCACTCAATTTCAGGTCACAGGCTGTTTCTATTGACAACAAGGTCTACTTCATGCATTCAGATCCAGAAGGGATTGTTTCCTATGATATGGAAACCGGGGTTTGGACACAGTACATGATCCCGGGGCCGCTGCACCTGACGGACCACGCGCTGGCCGAGTGCGGTGGCCGGATCATGCTTGTGGGGCTACTCTCGAAGAATGCCGCCACTTGTGTGTGCATATGGGAGCTGCAGAAGATGATGTTGTTGTGGAAGGAGGTTGACAGAATGCCAAATGAATGGTGCTTGGATTTCTACGGGAAGCACGTTCGGATGACTTGCTTGGGGAACAAAGGCTTGCTTATGTTGTCCTTGAGGTCAAGACAGATGAATCGGTTAGTTACTTATAACATCGCGAGTAGGGAATGGTTGAAGGTTCCTGCGTGCGTGGTGCCACATGGAAGAAAACGGCAATGGATAGCGTATGGTACTGCATTTCATCCATGCCTTGCTGCTGTGGCTTGA 1362 0.4699 MEEGVAMLRHLIGQLKHLSESDPSQSPSFILLQHHTNPQPPPRWSFFDIDDNSVDDFCDLVMTAGKSASFSTMDLVKHPSTKKCRRDRSKEKSSKRSSVTEAMEEQIWKDFPEDLFEAVIARLPIATFFRFRSVCRRWNSLLASESFSQHCAQVPQANPWFYTITHEHANSGAMYDPSVKKWYHLTISTLPTKLIVLPMASAGGLVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRIGVGMTINGNSYKILWVTCDGEYEIYDSVGKSWSRQGNMPAGIKLPLSLNFRSQAVSIDNKVYFMHSDPEGIVSYDMETGVWTQYMIPGPLHLTDHALAECGGRIMLVGLLSKNAATCVCIWELQKMMLLWKEVDRMPNEWCLDFYGKHVRMTCLGNKGLLMLSLRSRQMNRLVTYNIASREWLKVPACVVPHGRKRQWIAYGTAFHPCLAAVA* 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1041 453 PANTHER F-BOX/KELCH-REPEAT PROTEIN 42 451 - -
Lja4g1041 453 Pfam F-box domain 108 146 IPR001810 GO:0005515
Lja4g1041 453 Gene3D - 162 438 IPR015915 GO:0005515
Lja4g1041 453 Gene3D - 108 147 - -
Lja4g1041 453 ProSiteProfiles F-box domain profile. 105 150 IPR001810 GO:0005515
Lja4g1041 453 SUPERFAMILY F-box domain 102 192 IPR036047 GO:0005515
Lja4g1041 453 SUPERFAMILY Galactose oxidase, central domain 172 434 IPR011043 -
Lja4g1041 453 SMART fbox_2 111 151 IPR001810 GO:0005515
Lja4g1041 453 PANTHER BNAA07G08860D PROTEIN 42 451 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1041 Lja-Chr4 8874291 8877612 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1041 - - gmx:100795488 707.597
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1041 4 8874291 8877612 Lja4g1041 4 8874291 8877612 ECH