Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1002 ATGGCGTCGTTATCTGCATCATCACTCTATCACTTCTCTACCATTTCACCTTCCAACAACACTCCCGACATTACCAAGATCTCTCAATGTCAATGCCTCCCTTTCCTCCCCTCTCACCGCTCCCATTCACTCCGAAAGGCTCTTTCTTTATTACCAAGGGGAAATCAATCACCAAGCACCAAGATATCTGCTTCATTAACAGATGTTTCACCGAGTGTGTTGGTGGAGGAGCAGCAGCTCCAAAAGGGAGAAACTTGGTCTGTTCACAAGTTTGGTGGGACATGTATGGGAAGCTCCCAGAGAATAAAGAATGTTGGGGACATAGTTCTTGAGGATGATTCGGAGAGGAAGTTGGTGGTTGTCTCTGCAATGTCTAAGGTGACTGATATGATGTATGAGCTTATCAACAAGGCGCAATCGCGTGACGAGTCTTATGTATCTTCGTTGGACGCGGTTTTGGAGAAGCATAGTTTGACTGCACATGACTTACTTGATGGGGATGGACTTGCTACTTTCTTGTCTCAATTGCATCATGACATCAGTAACCTGAAGGCGATGCTTCGCGCAATATATATAGCTGGTCATGCAACAGAGTCCTTTACAGATTTTGTCGTAGGACACGGGGAATTATGGTCTGCCCAGATGTTATCTCTAGTTATTAGGAAGAATGGGGCTGATTGCAAGTGGATGGATACTAGGGATGTCCTCATTGTGAATCCTACTAGTTCTAATCAAGTTGATCCTGACTATTTGGAATCTGAGAAAAGACTTGAAACATGGTTCTCTTTGAATCCATGCAAGGTCATCATTGCCACTGGATTCATTGCAAGCACACCTCAAAAAATTCCAACTACGCTGAAGAGAGATGGAAGTGACTTCTCAGCTGCAATTATGGGTGCTCTATTTAGGGCTCGTCAGGTCACAATTTGGACAGACGTTGATGGTGTGTATAGTGCAGATCCTAGAAAAGTTAGTGAGGCTGTGATTTTGAAGACGTTGTCTTATCAAGAGGCATGGGAAATGTCTTATTTTGGTGCAAATGTTTTACATCCTCGCACAATAATTCCTGTGATGCAATATGGCATACCAATCTTAATAAGGAATATCTTCAACCTCTCTGCTCCTGGAACAAAGATCTGCCATCCTTCTGTTAATGATAATGAAGATATGATGAACGTGAAAAATTTTGTCAAAGGATTTGCAACTATTGATAACTTGGCTCTCATCAATGTTGAGGGAACTGGAATGGCTGGTGTTCCAGGTACAGCCAGTGCTATTTTTGGTGCTGTAAAAGATGTTGGAGCTAATGTTATAATGATATCTCAGGCTAGTAGTGAGCATTCTATATGCTTTGCTGTGCCTGAGAAGGAAGTAAAAGCTGTTGCTGAGGCATTGCAATCTAGATTTCGTCATGCTTTGGATAACGGTCGTCTTTCTCAGGTTGCGATTATCCCAAATTGTAGCATTCTGGCTGCTGTTGGTCAGAAAATGGCTAGCACTCCTGGAGTGAGTGCCACCCTTTTCAATGCATTGGCCAAGGCCAATATAAATGTCCGTGCTATAGCGCAAGGTTGTTCTGAGTACAATATTACTGTTGTTCTTAAACGAGAGGATTGTGTAAAAGCTTTACGGGCTGTGCATTCCAGATTTTATCTCTCAAGAACCACCATAGCAATGGGCATTATTGGACCTGGTTTAATTGGGAGCACACTACTTGACCAGCTAAGAGATCAGGCCTCAATTCTGAAAGAAGAATTTAACATTGATTTACGTGTAATGGGCATACTTGGTTCAAAGTCAATGCTTCTTAGTGATTGGGGCATTGACTTAGCTAGATGGAGAGAACTTCGAGATGAAAGCGGAGAAGTTGCTAATTTGGAAAAATTTGTTCAACATGTGCATGGAAATCATTTTATACCTAACACAGCAATAGTGGACTGCACAGCTGATTCGGTCATTGCTGGCCATTACTATGATTGGTTGCGCAAAGGAATACATGTAGTTACCCCCAATAAAAAGGCAAATTCAGGACCACTTGATCAGTATTTGAAGTTAAGAGCTCTTCAGAGGCAATCCTATACGCACTACTTTTATGAAGCAACTGTTGGAGCTGGTCTGCCCATTGTCAGCACTTTACGTGGCCTCCTTGAAACTGGAGACAGAATATTGCAAATTGAAGGCATCTTCAGTGGGACTTTGAGTTACATCTTTAATAACTTCAAAGATGGCCGGGCTTTTAGTGAGGTAGTTCAGGAAGCAAAGGAAGCGGGTTATACTGAGCCGGATCCAAGGGATGATCTATCTGGAACAGATGTTGCTAGAAAGGTGATAATTCTTGCTAGGGAATCTGGTTTAAAGCTAGAACTATCTAATATACCTGTTGAAAGCCTAGTGCCCGAACCACTACAAGCTTGTGCATCAGCTCAGGAATTTATGCAACGGCTACCGGAATTCGACCAGATGTTTGCAAAGAAACTAGAAGAAGCTGAGAACGCTGGGGAAGTGTTGAGATACGTCGGAGTGGTGGACGTGACCAGTAAAAAGGGAGTTGTAGAGCTGCGAAGATACAAGAAAGATCATCCATTTGCTCAATTGTCTGGATCAGATAACATTATTGCATTTACTACAAGAAGGTACAAGGATCAGCCTCTGATAGTTCGTGGTCCTGGAGCCGGTGCTCAAGTCACAGCTGGTGGAATATTTAGTGACATTTTACGACTTGCCTCATATCTTGGTGCGCCATCATAG 2748 0.4279 MASLSASSLYHFSTISPSNNTPDITKISQCQCLPFLPSHRSHSLRKALSLLPRGNQSPSTKISASLTDVSPSVLVEEQQLQKGETWSVHKFGGTCMGSSQRIKNVGDIVLEDDSERKLVVVSAMSKVTDMMYELINKAQSRDESYVSSLDAVLEKHSLTAHDLLDGDGLATFLSQLHHDISNLKAMLRAIYIAGHATESFTDFVVGHGELWSAQMLSLVIRKNGADCKWMDTRDVLIVNPTSSNQVDPDYLESEKRLETWFSLNPCKVIIATGFIASTPQKIPTTLKRDGSDFSAAIMGALFRARQVTIWTDVDGVYSADPRKVSEAVILKTLSYQEAWEMSYFGANVLHPRTIIPVMQYGIPILIRNIFNLSAPGTKICHPSVNDNEDMMNVKNFVKGFATIDNLALINVEGTGMAGVPGTASAIFGAVKDVGANVIMISQASSEHSICFAVPEKEVKAVAEALQSRFRHALDNGRLSQVAIIPNCSILAAVGQKMASTPGVSATLFNALAKANINVRAIAQGCSEYNITVVLKREDCVKALRAVHSRFYLSRTTIAMGIIGPGLIGSTLLDQLRDQASILKEEFNIDLRVMGILGSKSMLLSDWGIDLARWRELRDESGEVANLEKFVQHVHGNHFIPNTAIVDCTADSVIAGHYYDWLRKGIHVVTPNKKANSGPLDQYLKLRALQRQSYTHYFYEATVGAGLPIVSTLRGLLETGDRILQIEGIFSGTLSYIFNNFKDGRAFSEVVQEAKEAGYTEPDPRDDLSGTDVARKVIILARESGLKLELSNIPVESLVPEPLQACASAQEFMQRLPEFDQMFAKKLEEAENAGEVLRYVGVVDVTSKKGVVELRRYKKDHPFAQLSGSDNIIAFTTRRYKDQPLIVRGPGAGAQVTAGGIFSDILRLASYLGAPS* 916
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1002 915 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 555 729 IPR036291 -
Lja4g1002 915 PANTHER ASPARTOKINASE-HOMOSERINE DEHYDROGENASE 1 915 - -
Lja4g1002 915 Pfam ACT domain 415 469 IPR002912 -
Lja4g1002 915 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 707 892 - -
Lja4g1002 915 Pfam Amino acid kinase family 87 368 IPR001048 -
Lja4g1002 915 Pfam Homoserine dehydrogenase, NAD binding domain 563 699 IPR005106 GO:0016491|GO:0050661
Lja4g1002 915 Pfam Homoserine dehydrogenase 707 905 IPR001342 GO:0006520
Lja4g1002 915 PANTHER - 1 915 IPR011147 GO:0004072|GO:0004412|GO:0009067
Lja4g1002 915 SUPERFAMILY Carbamate kinase-like 87 381 IPR036393 -
Lja4g1002 915 CDD ACT_AKi-HSDH-ThrA_2 487 552 - -
Lja4g1002 915 CDD ACT_AKi-HSDH-ThrA-like_1 406 485 - -
Lja4g1002 915 ProSitePatterns Homoserine dehydrogenase signature. 753 775 IPR019811 GO:0006520
Lja4g1002 915 SUPERFAMILY ACT-like 396 470 IPR045865 -
Lja4g1002 915 Gene3D - 392 552 - -
Lja4g1002 915 Gene3D Dihydrodipicolinate Reductase; domain 2 718 889 - -
Lja4g1002 915 TIGRFAM asp_kinases: aspartate kinase 86 550 IPR001341 GO:0004072|GO:0008652
Lja4g1002 915 SUPERFAMILY ACT-like 474 566 IPR045865 -
Lja4g1002 915 Gene3D - 558 907 - -
Lja4g1002 915 ProSitePatterns Aspartokinase signature. 88 96 IPR018042 GO:0004072|GO:0008652
Lja4g1002 915 ProSiteProfiles ACT domain profile. 411 486 IPR002912 -
Lja4g1002 915 ProSiteProfiles ACT domain profile. 492 569 IPR002912 -
Lja4g1002 915 CDD AAK_AK-HSDH 86 380 IPR041743 -
Lja4g1002 915 Pfam ACT domain 485 548 IPR027795 -
Lja4g1002 915 Gene3D - 86 382 IPR036393 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1002 Lja-Chr4 8521494 8533325 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1002 K12524 - gmx:548017 1620.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1002 4 8521494 8533325 Lja4g1002 4 8521494 8533325 ECH