Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0788 ATGGACCCCGCTACTTCTCGTCCAGCTGTAGTCATCGATAATGGCTCCGGGTATACGAAGATGGGGTTTGCTGGTAATGTTGAGCCATGTTTTATTGTTCCGACAGTGGTTGCGGTTAACGAGTCCTTTCTGAATCAATCGAGGAGCACTTCTAAAGGCAATTGGGTTGCCCAGCACAACGCTGGGGTTATGGCGGATCTTGATTTCTTTATTGGGGATGATGCGCTTTCTAAGTCGCGATCCAGCAGCACTTACAATCTCACTTACCCGATTCGGCATGGCCAGGTTGATAACTGGGACGCCATGGAGCGCTACTGGCAGCAGTGCATATTCAACTATTTGAGGTGTGATCCTGAGGATCACTATTTTCTCTTGACGGAGAGTCCGTTGACAGCTCCTGAGAGTCGCGAGTATACTGGGGAAATCATGTTTGAGACTTTTAATGTACCTGGACTTTACATTGCTGTGAATTCTGTGCTTGCTCTTGCAGCTGGCTACACAACATCTAAGTGTGAGATGACAGGAGTCGTAGTGGATGTTGGAGATGGGTCTACTCATGTTGTGCCTGTCGCAGATGGCTATGTTATTGGGAGTAGTATCAAATCGATTCCTCTTGCTGGAAAGGATGTTACTCTTTTTGTTCAGCAGCTTATGCGGGAAAGAGGAGAGAATGTACCACCTGAAGATTCTTTTGAAGTGGCTCGTAAAGTAAAGGAAATGTATTGCTACACATGCTCTGACATTGTGAAGGAATTTAATAAACATGACAAAGAACCAGCCAAATATATCAAGCAATGGAGAGGCATCAAACCAAAGACAGGGGCTCCATATTCCTGTGATATTGGCTATGAACGATTTCTTGGCCCTGAGGTTTTCTTTAATCCTGAGATATATAGCAGTGACTTTAGCACTCCTTTGCCAGTTGTAATAGACAAGTGCATTCAGTCTGCTCCAATTGACACGAGAAGATCATTGTACAAGAATATAGTGTTGTCTGGAGGATCAACCATGTTCAAGGATTTTCACAGGAGGTTGCAACGTGATCTAAAGAAAATTGTTGATGCTCGTGCCCTTTCAGCTGAAACACGTCTAAATGGGGAGATAAAATCACATCCAGTGGAGGTCAATGTACTCAGCCATCCAATCCAGAGATTTGCAGTTTGGTTTGGGGGTTCTGTGCTTGCATCAACGCCTGAGTTTTTTACGGCTTGTCATACCAAGGCAGAGTATGAAGAATATGGAGCAAGCATTTGCAGGACAAATCCTGTTTTCAAGGGGATGTATTAA 1287 0.4444 MDPATSRPAVVIDNGSGYTKMGFAGNVEPCFIVPTVVAVNESFLNQSRSTSKGNWVAQHNAGVMADLDFFIGDDALSKSRSSSTYNLTYPIRHGQVDNWDAMERYWQQCIFNYLRCDPEDHYFLLTESPLTAPESREYTGEIMFETFNVPGLYIAVNSVLALAAGYTTSKCEMTGVVVDVGDGSTHVVPVADGYVIGSSIKSIPLAGKDVTLFVQQLMRERGENVPPEDSFEVARKVKEMYCYTCSDIVKEFNKHDKEPAKYIKQWRGIKPKTGAPYSCDIGYERFLGPEVFFNPEIYSSDFSTPLPVVIDKCIQSAPIDTRRSLYKNIVLSGGSTMFKDFHRRLQRDLKKIVDARALSAETRLNGEIKSHPVEVNVLSHPIQRFAVWFGGSVLASTPEFFTACHTKAEYEEYGASICRTNPVFKGMY* 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0788 428 Gene3D - 10 414 - -
Lja4g0788 428 CDD NBD_sugar-kinase_HSP70_actin 10 206 - -
Lja4g0788 428 Gene3D - 158 386 - -
Lja4g0788 428 PANTHER ACTIN-RELATED PROTEIN 3-LIKE 7 421 - -
Lja4g0788 428 SUPERFAMILY Actin-like ATPase domain 173 423 IPR043129 -
Lja4g0788 428 Gene3D Actin; Chain A, domain 4 205 303 - -
Lja4g0788 428 SMART actin_3 7 423 IPR004000 -
Lja4g0788 428 Pfam Actin 7 419 IPR004000 -
Lja4g0788 428 SUPERFAMILY Actin-like ATPase domain 7 177 IPR043129 -
Lja4g0788 428 PANTHER ACTIN 7 421 IPR004000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0788 Lja-Chr4 6527835 6533328 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0788 9 418 Miscellaneous Gene Families AT2G42100 35.122 6.25e-74 234
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0788 K18584 - gmx:100780462 833.172
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0788 4 6527835 6533328 Lja4g0788 4 6527835 6533328 ECH