Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0783 ATGCGGATCCCACGGTGGCTGGACACGTGCTCCTCCGCCAACTGCGCCACTGCCACCAACCAATCCACCATCACACTCCCCACCAAGCACAAACAAAAACAGCAACATGCATCTGATTCAAGCACCTCCTCCTCCTCTTACTCCACCACCACCTCCCACGACAGCACCACCAGTACCCTCCATAGCAACACCTCCATTCAAACACTCCCATCCGTTCCTTCCCTCCAAAAACTCTCTCCACAAACACTAAACTTCTCAATCTCCCACCACTGTGTCACCACTCTCACACCACCACAACCCTCTCGCCCCGTCACCTCCCTCGCCCCCCACCACAACCTCCTCTACGCCGCCGCAGATCACCAAATCATCGTCTATGATCGCCACACGTGTCAAATTCTCCACACATTCAACGCCGGAGCAACCTCCTCCGGCTGCACAAAATCCATCACCTTCTCCGACGGCATGATCTTCACCACCCACCAAGACCGCAAAATCCGCGTGTGGCGGCACGACCACAATAACAACAACAACAACCACCACCACCGCATGCTAACCTCTCTCCCCACCGTCAGCGACCGTCTCCGCCGTTTCCTCCTCCCCAATAGCTACGTCACCGTCCGACGCCACGAGAAGCGGCTCTGGATAGAGCACGCCGACGCCGTCACCGGCCTCGCCGTCTCCAACGGCGTCATCTACTCCGTCTCGTGGGACAGGACGCTCAAGATATGGCGCGTCTCCGATCTCCGCTGCGTGGAGTCCGTGAAGGCTCACGACGACGCGATCAACGCGGTTGCTGTCTCCGGCGATGGAACAGTCTACACCGGATCCGCCGATAGAAGGATACGGGTCTGGGCGAAGCCCGAGGGGGAGAAGCGGCACGTTCTGGTGGCGACGCTGGAGAAGCACAAATCGGCGGTGAACGCACTGGCGTTAAACGACGACGGTTCGGTTCTGTTTTCCGGCGCGTGCGATCGTTCGATTTTGGTGTGGGAGAGGGAGGACAGTGCGAACCACATGGTGGTGAGTGGGGCCCTGAGGGGCCACGAGAAGGCGATACTGTGTTTGATCAACGTCTCTGATTTTCTCCTGAGTGGGTCCGCTGATCGGACGGTCAGGGTTTGGAAGCGGGGTTTCGATGGACCGTTTTGCTGCCTCGCTGTCCTCGACGGTCACCGGAAACCGGTGAAGTCCTTGGCGGCGGTTGCGGAGAGTGATCAGAATTCCCCTGACGGCGTTGTTTCGATTTTCAGTGGTTCTCTTGATGGAGAGATAAGAGTGTGGCAGGTTTCTCTCACGAGTCTAACCGCACAGGATGAATCGAACTACTAG 1329 0.5794 MRIPRWLDTCSSANCATATNQSTITLPTKHKQKQQHASDSSTSSSSYSTTTSHDSTTSTLHSNTSIQTLPSVPSLQKLSPQTLNFSISHHCVTTLTPPQPSRPVTSLAPHHNLLYAAADHQIIVYDRHTCQILHTFNAGATSSGCTKSITFSDGMIFTTHQDRKIRVWRHDHNNNNNNHHHRMLTSLPTVSDRLRRFLLPNSYVTVRRHEKRLWIEHADAVTGLAVSNGVIYSVSWDRTLKIWRVSDLRCVESVKAHDDAINAVAVSGDGTVYTGSADRRIRVWAKPEGEKRHVLVATLEKHKSAVNALALNDDGSVLFSGACDRSILVWEREDSANHMVVSGALRGHEKAILCLINVSDFLLSGSADRTVRVWKRGFDGPFCCLAVLDGHRKPVKSLAAVAESDQNSPDGVVSIFSGSLDGEIRVWQVSLTSLTAQDESNY* 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0783 442 ProSiteProfiles Trp-Asp (WD) repeats profile. 299 340 IPR001680 GO:0005515
Lja4g0783 442 Gene3D - 204 291 IPR015943 GO:0005515
Lja4g0783 442 Gene3D - 292 441 IPR015943 GO:0005515
Lja4g0783 442 ProSiteProfiles Trp-Asp (WD) repeats profile. 214 253 IPR001680 GO:0005515
Lja4g0783 442 SUPERFAMILY WD40 repeat-like 100 429 IPR036322 GO:0005515
Lja4g0783 442 PRINTS G protein beta WD-40 repeat signature 415 429 IPR020472 -
Lja4g0783 442 PRINTS G protein beta WD-40 repeat signature 231 245 IPR020472 -
Lja4g0783 442 PRINTS G protein beta WD-40 repeat signature 362 376 IPR020472 -
Lja4g0783 442 Pfam WD domain, G-beta repeat 249 284 IPR001680 GO:0005515
Lja4g0783 442 Pfam WD domain, G-beta repeat 344 375 IPR001680 GO:0005515
Lja4g0783 442 Pfam WD domain, G-beta repeat 296 330 IPR001680 GO:0005515
Lja4g0783 442 Pfam WD domain, G-beta repeat 383 427 IPR001680 GO:0005515
Lja4g0783 442 Gene3D - 79 199 IPR015943 GO:0005515
Lja4g0783 442 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 299 331 - -
Lja4g0783 442 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 345 375 - -
Lja4g0783 442 PANTHER F21J9.19 20 434 - -
Lja4g0783 442 ProSiteProfiles Trp-Asp (WD) repeats profile. 345 375 IPR001680 GO:0005515
Lja4g0783 442 ProSiteProfiles Trp-Asp (WD) repeats profile. 254 284 IPR001680 GO:0005515
Lja4g0783 442 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 20 434 IPR045182 -
Lja4g0783 442 SMART WD40_4 292 331 IPR001680 GO:0005515
Lja4g0783 442 SMART WD40_4 247 285 IPR001680 GO:0005515
Lja4g0783 442 SMART WD40_4 338 375 IPR001680 GO:0005515
Lja4g0783 442 SMART WD40_4 129 169 IPR001680 GO:0005515
Lja4g0783 442 SMART WD40_4 88 126 IPR001680 GO:0005515
Lja4g0783 442 SMART WD40_4 381 428 IPR001680 GO:0005515
Lja4g0783 442 SMART WD40_4 207 244 IPR001680 GO:0005515
Lja4g0783 442 MobiDBLite consensus disorder prediction 26 65 - -
Lja4g0783 442 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 254 284 - -
Lja4g0783 442 CDD WD40 103 428 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0783 Lja-Chr4 6493899 6495794 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0783 152 439 Acyl Lipid Metabolism Gene Families AT3G18860 26.797 3.52e-11 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0783 - - gmx:100817776 620.157
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0783 4 6493899 6495794 Lja4g0783 4 6493899 6495794 ECH