Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0780 ATGATCATATCATATGCTAATGCTATGATGGGAAACAAACACGAAATGATGGGTAGTTGGCGGTGGTGGTGCACATTAATATTATTCAATCTTCTAATAATCACACCGGAAGTAGTTAAGCCGGTGGTGGCCGTGGCGGGTGTTCCACTTAACACAAATTCACGGTGGATCGTGAACCAGGATGGGCTGAGGGTGAAGCTGGCGTGTGTAAATTGGGTGTCTCATCTGGATGCGGTGGTGGCGGAGGGGCTGAGCAAGCAGCCCGTGGATGTAATTTCAAAGGGAATAAAGTCCATGGGCTTTAACTGTGTCAGGCTCACTTGGCCCATTCTCCTCGTCACCAATGACTCTCTTTCTTCTCTCACTGTTAGGCAATCCTTTCAGAATCTTGGCCTCCTTGATTCTGTTGCTGGTGTCCAAGCCAACAACCCCTCCATCATTGATCTCACCCTCATCCAAGCTTTCCAGGCAGTGGTGAAGAGTCTTGGGGACAATGATGTGATGGCAATTTTGGACAACCACATAACCCAGCCAGGGTGGTGCTGCAGCAATTCGGATGGCAATGGGTTCTTTGGTGACCAATTTTTCGACCCGGACCAGTGGATCTTGGGCCTAACCAAAATGGCCACTCTTTTCAATGGAGTGCCTAATGTGGTGGGCATGAGCTTGAGGAATGAGCTCCGAGGCCCAAAACAAAATGTCAATGATTGGTACAGGTACATGGTGAAAGGAGCAGAAGCGGTTCATGCAGCAAACCCAGATGTTCTTGTCATTCTATCTGGTCTAAACTTTGACAAGGACTTGTCGTTCATTAAGAATAGACCAGTGAATCTCACATTCAAGGGGAAACTAGTATATGAGGCACATTGGTATGGCTTCACTGATGGTCAAGCTTGGGTATCAGGGAACCCAAACCAAGTGTGTGGTCAAGTGGCTGGGAACATGAAGAGAACCTCTGGCTTCTTGGTGGACCAAGGTTGGCCATTGTTTGTGAGTGAGTTTGGTGTGGACTTGAGAGGTTCAAACGTGAACGACAACCGCTACCTTAACTGTTTCATGGCGGTGGCGGCCGAGCTTGACTTGGATTGGGCCTTGTGGACACTGGTTGGTAGTTACTACTTCAGACAAGGGGTCAGAGGAATGGAAGAGTTCTATGGGGTTCTTAGATGGGATTGGACACAAGTTAGAAATACCAGTTTCTTGAACAGGATCAATGGCCTCCAACTTCCATTTCGAGGGCCAGGTATAACAAAAGGCAATCCATACAAATTGATATTCCATCCTTTAACAGGTCTCTGTGTCACAAGAAAGTCATTGCTAGAGCCACTAACATTAGGTCCTTGCTCTTTTTCTGATGGTTGGAATTACACACCCCAGAAGACCCTATCAATAAAGGGAACCTACTTTTGCATACAAGCAGAGAATGAAGGGATGCCTGCAAAACTTAGCATAATATGCTCGGGTCCTAACAATAAATGGGAAATGATCTCAGATTCAAAATTGCACCTTTCATCTAAAGTCAACAATGGTTCTAGTGTTTGTCTAGATGTTGATGAAAACAACAACATTGTGACCAACTCTTGTAAATGCTTGAGCAGAGATGTAAAGTGTGACCCAGGAAGCCAATGGTTCAAACTCATTGACAATACCAACAATACGAAAGCCATAACTGATGAAAGGTATAAATTCGGCCACTTTATCCCACCTTCGAATTTCACCTTTGATACTTTATATGATTTTATTGAACCCAAACACAAGCAAGCATCAGATGACACTGTCATGACCAAACAAATTCGTGCTACTCATGCTCCAGTTGGTGGACATATTAACGTTAGACCTCTTCTTAATGTTGTTCAGGACATTTTCCACCGTGCCTCTTTCATCCCTCACATTGTTCAGGGAAAGCAAGAGCAATTGGGAGCCATAGAGGACAATTCCCACCAATCTGACTTAGCTGATATGCTAGATATTTCTTACCACACAATTAACAAAATTTCCTGCGAGATATCTTGCAAGTGTGTAGGTGGTGGAGACGCCCATGCCACAACCATAGAAATACTGAGCATGCTCTCAAGCTATTCATGGGATACTAAAGTGGTGATTGGTTTAGCAGCTTTTGCAGCAAACTTGGGGGAGTTTTGGCTGATGGCTCAGCTCTATGCCACCAACCGTCTTGCCAAGTCTGTTGCAATGCTGAAGCAAATCCATGAAACACTTGAACAAGTGGAAGCTTTGGGACCCAAGTTTGAAACAGTGAACAACCTTCTCAAGGCCATGTTAGATGTTGCCAATTGCATTGTTGAGTTCCATGAGCTTCCCTCTCAGTACATTGACCCTGAAGCACCAGAAATGTTGAATGTATCCACTCTTATTCCAAGTGCTGTCTATTGGACCATTCGGAGTATTGTGGCATGTGCTTCACATGTTTTAGGCATAGTTGGTCTGGCTCAAGGATACCTGATATCAACAATAGAGACTTGGGAGCTTTCCAGTTTGGTTCATAAGCTCGATAACATAAATAGCCACCTTCGGAAACAACTAGCCCTTTGTCATCAGCACTTAGATGACAACAAACAGATAGAAGCATTTCAAACACTTCGGCGCCTTTTTGAGACATTGCATCTAGATAACATGAAGGTTCTTAAAGCTCTGTTTTGCAGCAAGGATGATCTGTTGCCACTCTTCGATGGTTCTACCAAGAAAAGGGTTAGCATTGATGTTTTGAAGAGAAAGATTGTGTTATTCTACATAACAGACCTCCATCATGTCTCTGAACAAGAGATTATGATTTTTGAACAAATGTATCAAGAGTCAAGGCAAGACTCAACCAGGGTAGAGGGTCAATACGAATTTGTTTGGCTTCCTGTTGTGGAAAAAGGAACCTCAGGGGCTGAAGCAAAACAAAGGTTCGAGAAGCTGCAATCAATGATGCCATGGTTTTCAGTTTATGACCCTTCTCTTCTGGAGCCATCAACCATCAAGTACATTAAAGAGGTGTGGCTTTTCAGTGGGAAGCCTATCCTTGTAGTGTTGGACCCCCATGGGAAGGTTATGAATCTCAATGCAATACACATGATGTGGATTTGGGGAAGCCTGGCATATCCATTTTCTAGCTCAAAGGAAGAATCACTGTGGAAGGAGGAAACATGGGGACTTACCCTGTTAGCAGATACAATTGATCCTTTACTCATTGATTGGGTATCAGCGGGAAAATACATATGCTTGTATGGAGGAGATGATATGGAGTGGATCAGAAAATTTACAAGTACAGCAAAATCAGTGGCAAGGGAACTTCAAATACCACTAGAGATCATTTATGTGGGAAAAAGCAACCCAGGAGAGAGAGTTAGAAAAATCAACAAGGCCATACGTGAAGAAAATTTGAGCAACGTACTTGCTGACCTTACTATTATTTGGTTCTTTTGGGTTAGGCTGGAGAGCATGTGGCACTCCAAACTACAGCAGAGCAAGACAGTGGAGAATGACCAGATAATGCATGGAATAATGAGGATCCTAAGCTTTGATAGCAGTGATCAGGGTTGGGCTGTGATCAATCAAGGCACAGGGAGAATGGCACAGGGCAAGGGAGACACATTTATAAAGTGCCTTGAGGAACATGAGCACTGGAAGGATAAGGTTAATGATAAAGGGTTTTTGCCAGCAATGGATGATTATATGCAAGAACTCCAAACCCCACATCACTGCAATCGTTTGATTCTGCCAGGAGTCAATGGTAGAATCCCTCAAAAGGTTGTCTGTGCTGAGTGTGGCCGTTCAATGGAAAAGTTCTTCATGTATCGTTGCTGCAATGAGTGA 3816 0.4392 MIISYANAMMGNKHEMMGSWRWWCTLILFNLLIITPEVVKPVVAVAGVPLNTNSRWIVNQDGLRVKLACVNWVSHLDAVVAEGLSKQPVDVISKGIKSMGFNCVRLTWPILLVTNDSLSSLTVRQSFQNLGLLDSVAGVQANNPSIIDLTLIQAFQAVVKSLGDNDVMAILDNHITQPGWCCSNSDGNGFFGDQFFDPDQWILGLTKMATLFNGVPNVVGMSLRNELRGPKQNVNDWYRYMVKGAEAVHAANPDVLVILSGLNFDKDLSFIKNRPVNLTFKGKLVYEAHWYGFTDGQAWVSGNPNQVCGQVAGNMKRTSGFLVDQGWPLFVSEFGVDLRGSNVNDNRYLNCFMAVAAELDLDWALWTLVGSYYFRQGVRGMEEFYGVLRWDWTQVRNTSFLNRINGLQLPFRGPGITKGNPYKLIFHPLTGLCVTRKSLLEPLTLGPCSFSDGWNYTPQKTLSIKGTYFCIQAENEGMPAKLSIICSGPNNKWEMISDSKLHLSSKVNNGSSVCLDVDENNNIVTNSCKCLSRDVKCDPGSQWFKLIDNTNNTKAITDERYKFGHFIPPSNFTFDTLYDFIEPKHKQASDDTVMTKQIRATHAPVGGHINVRPLLNVVQDIFHRASFIPHIVQGKQEQLGAIEDNSHQSDLADMLDISYHTINKISCEISCKCVGGGDAHATTIEILSMLSSYSWDTKVVIGLAAFAANLGEFWLMAQLYATNRLAKSVAMLKQIHETLEQVEALGPKFETVNNLLKAMLDVANCIVEFHELPSQYIDPEAPEMLNVSTLIPSAVYWTIRSIVACASHVLGIVGLAQGYLISTIETWELSSLVHKLDNINSHLRKQLALCHQHLDDNKQIEAFQTLRRLFETLHLDNMKVLKALFCSKDDLLPLFDGSTKKRVSIDVLKRKIVLFYITDLHHVSEQEIMIFEQMYQESRQDSTRVEGQYEFVWLPVVEKGTSGAEAKQRFEKLQSMMPWFSVYDPSLLEPSTIKYIKEVWLFSGKPILVVLDPHGKVMNLNAIHMMWIWGSLAYPFSSSKEESLWKEETWGLTLLADTIDPLLIDWVSAGKYICLYGGDDMEWIRKFTSTAKSVARELQIPLEIIYVGKSNPGERVRKINKAIREENLSNVLADLTIIWFFWVRLESMWHSKLQQSKTVENDQIMHGIMRILSFDSSDQGWAVINQGTGRMAQGKGDTFIKCLEEHEHWKDKVNDKGFLPAMDDYMQELQTPHHCNRLILPGVNGRIPQKVVCAECGRSMEKFFMYRCCNE* 1272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0780 1271 SUPERFAMILY Ricin B-like lectins 419 546 IPR035992 -
Lja4g0780 1271 Gene3D Glycosidases 48 407 - -
Lja4g0780 1271 PANTHER PROTEIN SIEVE ELEMENT OCCLUSION B-LIKE 587 1271 IPR039299 GO:0010088
Lja4g0780 1271 Gene3D - 425 544 - -
Lja4g0780 1271 CDD RICIN 422 528 IPR000772 -
Lja4g0780 1271 PANTHER SIEVE ELEMENT OCCLUSION-RELATED 587 1271 - -
Lja4g0780 1271 Pfam Sieve element occlusion N-terminus 589 874 IPR027942 -
Lja4g0780 1271 SUPERFAMILY (Trans)glycosidases 49 400 IPR017853 -
Lja4g0780 1271 Pfam Cellulase (glycosyl hydrolase family 5) 92 368 IPR001547 GO:0004553|GO:0071704
Lja4g0780 1271 Pfam Sieve element occlusion C-terminus 1039 1270 IPR027944 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0780 Lja-Chr4 6473778 6482895 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0780 38 555 Glycoside Hydrolase AT1G13130 59.579 0.0 657
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0780 - - gmx:100799626 1101.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0780 4 6473778 6482895 Lja4g0780 4 6473778 6482895 ECH