Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0775 ATGCATTTGGAAACCGGTGACATGTATCAGAGTGTCGGGCCACGACACCTGCGTCTTCTGTTTTACCGTTCTCAGATATCTTACTACGTTAAAGCTGGTCTCATCGACAATGCCATCAAGGTGTTCGACGAAATGACTCAATCAAATTGCCGCCTCTTCAGCATCGACTACAACCGCTTCATCGGCGTCCTCATCCGCCACTCCCACCTCCACCTCGCCCACCACTACTACCACCGCCACGTCCTCCCCAACGGCTTCTCCCTCCTCCCCTTCACCTACTCCCGCTTCATCTCCGCCCTCTGCGCCGTCAAGGACTTCACCTCCATCGATACCCTTCTCCAACACATGGACTCCCTCGGCTTCGTCCCTGATATCTGGGCCTTCAACATCTACCTCACACTACTCTGCCGCGAGAATCGCTTGGAAACCGCCCTGCAGCTGTTTCGTACCATGCCGTTGAAAGGAAGAGAGCTTGATGTTGCGTCCTACACTATCATCATTGATGCTTTGTGCAAGTCTAAACGGTTTCACGAGGCTACTGTGGTTTGGCGTGGTTTGATTGAGAAGGGGTTGGTTCCTGATTGTAAGGCTTGTGCTGCCATTGTTATTGGGTTGTGCGGCGGTGGCAATGTTGATTTGGCGTATGAGCTTACCGTTGGTGTGATCAAAAGTGGGGTGAAGGTTAGTAGTTTGGTTTATAATGCTTTGATTAGTGGGTTTTGTAGGATGGGGAGGAATGATAAGGCGCTGGCGATTAAGAAGTTTATGAGCATGAATGGGTGTGCGCCGGATTTGGTTACTTATAACATTTTGTTGAATTTTTGTTGTGATAAAGTTATGCTGGATGAGGCAGAGAGGTTGGTGGAGACTATGGAGAGAAGTGGGTTGGAGCCGGATTTGTATAGTTATAATCAGTTGTTAAAAGGTTACTGTAAGGATAATAAGGTGGATAGGGCTTATCGGATAATGGTGGAGAGGATGCAGACCAAAGGGGTGTGTGATGTTGTTTCTTACAACACTATTATCACGGCATTGTGTAAGGCGCGCCGGACTAGGAGGGCTTATGATTTGTTTGAGGAGATGTACAGGAAAGGGATTGAACCGGATGTGGTGACGTTCACAATCCTTATAGAAGCGTTTTTAAGAGAAGGTAGTTCCGATGTTGCCAAGAAGCTTCTTGATCAAATGGAAAGGATAGGGCTTCAGCCTGATCAAATATTCTATACGACAATAGTTGATCATTCGTGCAGGACTGGGAAGATTGATGTGGCTCATCGTGCTTTTAGGGACATGTTGAAGAGTGGAATAAATCCGGATGTGGTTTCATATAATGCCCTCATCAATGGGTTTTGCAAGGCTTCTATGGTTGCAGATGCCATGCATCTATATGATGAAATGCAGATAAAAGGATTATTTCCTGATGAGGTAACTTTCAAGTTGATAGTTGGAGGGCTTATAAGGGAAAAGAAGCTCACATTGGCCTGCAGAGTTTGGGATCAGATGATGGAAAAAGGTTTTACGCTTGACAGCCGTCTTTCTGAGACTCTAATCAGAGCCATTCAATCAAGTGATGGAACATAA 1581 0.4636 MHLETGDMYQSVGPRHLRLLFYRSQISYYVKAGLIDNAIKVFDEMTQSNCRLFSIDYNRFIGVLIRHSHLHLAHHYYHRHVLPNGFSLLPFTYSRFISALCAVKDFTSIDTLLQHMDSLGFVPDIWAFNIYLTLLCRENRLETALQLFRTMPLKGRELDVASYTIIIDALCKSKRFHEATVVWRGLIEKGLVPDCKACAAIVIGLCGGGNVDLAYELTVGVIKSGVKVSSLVYNALISGFCRMGRNDKALAIKKFMSMNGCAPDLVTYNILLNFCCDKVMLDEAERLVETMERSGLEPDLYSYNQLLKGYCKDNKVDRAYRIMVERMQTKGVCDVVSYNTIITALCKARRTRRAYDLFEEMYRKGIEPDVVTFTILIEAFLREGSSDVAKKLLDQMERIGLQPDQIFYTTIVDHSCRTGKIDVAHRAFRDMLKSGINPDVVSYNALINGFCKASMVADAMHLYDEMQIKGLFPDEVTFKLIVGGLIREKKLTLACRVWDQMMEKGFTLDSRLSETLIRAIQSSDGT* 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0775 526 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 229 263 IPR002885 -
Lja4g0775 526 Gene3D Tetratricopeptide repeat domain 16 82 IPR011990 GO:0005515
Lja4g0775 526 Gene3D Tetratricopeptide repeat domain 327 421 IPR011990 GO:0005515
Lja4g0775 526 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 439 473 IPR002885 -
Lja4g0775 526 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 124 158 IPR002885 -
Lja4g0775 526 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 334 368 IPR002885 -
Lja4g0775 526 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 404 438 IPR002885 -
Lja4g0775 526 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 369 403 IPR002885 -
Lja4g0775 526 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 264 298 IPR002885 -
Lja4g0775 526 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 18 52 IPR002885 -
Lja4g0775 526 TIGRFAM PPR: pentatricopeptide repeat domain 301 332 IPR002885 -
Lja4g0775 526 TIGRFAM PPR: pentatricopeptide repeat domain 91 125 IPR002885 -
Lja4g0775 526 TIGRFAM PPR: pentatricopeptide repeat domain 26 51 IPR002885 -
Lja4g0775 526 TIGRFAM PPR: pentatricopeptide repeat domain 162 195 IPR002885 -
Lja4g0775 526 TIGRFAM PPR: pentatricopeptide repeat domain 266 299 IPR002885 -
Lja4g0775 526 TIGRFAM PPR: pentatricopeptide repeat domain 232 264 IPR002885 -
Lja4g0775 526 TIGRFAM PPR: pentatricopeptide repeat domain 336 370 IPR002885 -
Lja4g0775 526 TIGRFAM PPR: pentatricopeptide repeat domain 408 440 IPR002885 -
Lja4g0775 526 TIGRFAM PPR: pentatricopeptide repeat domain 476 509 IPR002885 -
Lja4g0775 526 TIGRFAM PPR: pentatricopeptide repeat domain 127 159 IPR002885 -
Lja4g0775 526 TIGRFAM PPR: pentatricopeptide repeat domain 441 475 IPR002885 -
Lja4g0775 526 TIGRFAM PPR: pentatricopeptide repeat domain 371 404 IPR002885 -
Lja4g0775 526 Pfam PPR repeat family 263 312 IPR002885 -
Lja4g0775 526 Pfam PPR repeat family 334 380 IPR002885 -
Lja4g0775 526 Pfam PPR repeat family 123 172 IPR002885 -
Lja4g0775 526 Pfam PPR repeat family 438 486 IPR002885 -
Lja4g0775 526 PANTHER MEMBRANE-ASSOCIATED SALT-INDUCIBLE PROTEIN-LIKE 18 524 - -
Lja4g0775 526 Gene3D Tetratricopeptide repeat domain 251 326 IPR011990 GO:0005515
Lja4g0775 526 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 159 193 IPR002885 -
Lja4g0775 526 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 474 508 IPR002885 -
Lja4g0775 526 Pfam PPR repeat 400 431 IPR002885 -
Lja4g0775 526 Pfam PPR repeat 225 256 IPR002885 -
Lja4g0775 526 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 299 330 IPR002885 -
Lja4g0775 526 Pfam PPR repeat 26 50 IPR002885 -
Lja4g0775 526 Gene3D Tetratricopeptide repeat domain 422 525 IPR011990 GO:0005515
Lja4g0775 526 Gene3D Tetratricopeptide repeat domain 83 221 IPR011990 GO:0005515
Lja4g0775 526 PANTHER MEMBRANE-ASSOCIATED SALT-INDUCIBLE PROTEIN-LIKE 18 524 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0775 97 519 Glycosyltransferase AT1G05670 27.739 1.40e-44 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0775 - - aprc:113872581 805.823
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0775 4 6447028 6448608 Lja4g0775 4 6447028 6448608 ECH