Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0617 ATGGACACAGATCTGAAGTCGGCGAAGTCCGCTTACCGGAACGCCAAGGCGGAGGGCAACCACCAGGAGGAGGCGCGGTGGGCCAATGTCATCGGCGACATATACAAGAACAGAGGAGAGTACACTGAAGCCCTCACCTGGCTCAAAGTCGATTACCGCATTTCGTTGAAGCACTTGACCGAGAAGCACTTGCTCCCAACCTGTCAATCCCTCGGTGAGATCTATCTCCGCCTCGAACGCTTCTCCGATGCCCTAACTTACCAGAAAAAGCATTTAGATCTTGCGAAGGAGGCTAGTGACCTAGTTGAGCAGCAGAGAGCAAGCACGCAGCTCGGTCGAACGTATCTTGAATTGTTTACTAAATCGGAGTATGATCATCATTCGATTCGGAAAGCTAAGAAGTATTTCAAGAGTGCAATGGATTTGGCCATGACTTTGAAAGAGAATCGGCCGAATAACAAGTCATACCTCAAGGAATACATTGATGCTCACAACAACATGGGCATGCTGGAAGTAGAACTGGAAAATTGGCATGATGCAATGTCAATTTTGGTTAAAGGTTTGAAAATTTGTGATGAAGAGGAGATTAGTGATAATGATGATGGGCGCAGCAGGCTCCATCATAACCTTGGGCGCGTGTATATGGAATTGAGGGCTTGGGATAAAGCTCGGAAACACATGGAGAAAGACATTCATATTTGTAATAGAATTGGGCATCGGCAAGGAGAAGCAAAAGGGTATATTAATCTCGGTGAAATGCATTATAGGATACAAATGTATGAGGAAGCAAATTCTTATTATGAGAAGGCGCTTACTTTGGTAAGAATATTGGAGGATGAAGAGGCTTTAATGGAGCAATGTAACGAGAATATTAAGATAGTGAAAGAAGCTGTGAAAGTAATGAAAGCAATAACGAGAGAAGAACAAAACTTGAAAAAACTGAAAAGAGATAAAACAAATGCAAGAGGAACACCGGATGAACAGAAATTTTTAGTGCTGCAAAATGAGACACTTGACCGACTCATTGAGAAAGCAGGGATGATATTTGCGTGGGAGAAGCATTGTGAATTTGCAAAGGAGAAGAAGAAAATAGCAAAAGAACTTTATAATGAGGAAAGACTGGGTGATTCATATCTCAACATTGGAGAATCATACCAGAAGCTTAGAAAGTTTAACAAAGCAATCAAATGGTACAAAAAGAGTTGGGAACAATTCATACAGCATGCTAACTTAGAGGGGCAAGCTCTTGTGAAAATTAATATTGGTAATATTTTGGATTCTACTCAAAATTGGAGAGGAGCATTGGATGCATACCAAGACAGTTACAGAATTGCTGTTGAGGCAAAGCTTCCTGATGTACAGATTAATGCCTTGGAAAATATGCATTATAGCAACATGATCAGATTTGATAATGAGGATGAGACCTGGAGGTTGAAACTTCTAATTGATAAGCTGAAGAAACCAGAAGAAGAGCCAGAAGCTAAAACTATGCCAGAGGATCGTTGCTCTGAGACTGATACTGAAGCAGATCATCTGTCAGATGGTGGGTCTGATGATTTCTGCATTCCAAAGACAATTTCTAGGTCAAAATCTCGGACTACTGGAGAAGAGTTTACAGATGACGTGCCTCTAATGTCAATATATCAGTCCATAAAAGGCTCATCCAAAAAGAACACAGACCATATGGATAGTCTTACCAACTCTTCCAAGCAAGCTCAGCTGTCACCCAAAAGTATGACAAATCTAACCAGCAGCCATCAGACGGCAAACAACCGTAAACGTGTTCTAGTTATTTCTGATGATGAGGAGGAGTATTTGAGCAGAAAGGATCATAAATGCCTGATAGAGGACTTCCCCACTTCTGATGCAATTATTAATAAAGCCAGTCCTCGTAAAGTTCAGGTTGTCTCTGAATATAGATCCAAATATCCAATTAATGTTGAAGAAAGTAGTAGTTCTTTCAAATGCTCTAGTCCAATCACAGCCGCTAAATCTAGCAGACATTCTGGATCTTTGAGTAATGATATAATTGCTGAAGCGGATTTTCCTAGTGGTTCTAAATGTGACATAGATTCCTCAGGCAAATATAAGGGTGTTGCCCATCCCTTGGTGCAATATCCCCAAAATGATTTGCAGCAACATATTACATGCCGGATTGGGAATGATCTGATTCACGTAGAAGCAGCCTTGTGTACTGCTGATGATCAGTTGAATATTGACTTGTTAAAAGCTGTAGTTCCATGTTTATACTATCTACAACTTCCAGCAGAAAAGAGATCAGAGGGTTTGTTGCCCATAATACAGCACATAAAATGTGCTGGAAGAGATCTAGAATCCTTGGAACCTATTGAAAAGCTTAAGGAACATCTGGGAAATGACACATTTGAAGCTTCCATTGAAGGATGCGTCCAGAAGCGCCTAATAAAAATATACGTAGACTGCTGCACGGAGTTGTCTAAGGTACCAAATATCAAGGTTCTGAAGAAACTTTATAATTTAGAGGTTTCGGATGATGAAATCGTTGTGTCTGACTGCGACCTGCAAGATTTGTCTATAACACCATTGATAAATGCACTGCAATCTCAAAAGGAATTTGCAATGCTTGATATCTCTCACAATCTGTTAGGAAATGGGGTGATGGAAAAACTTAAGAAGGTGTTCAGTGCATTGAACCAATCTTACGGTGGCTTAACTTTGGATTTGCATTGCAATCGATTTGGCCCAACAGCTCTGTTTCAGATTAGCGAATGCTCAGCATTATTTACCCGACTAGGAGTCCTTAACATTTCTGGAAACCGTCTTACTGATGCATGTAGATCTTATCTTTTGACAATCTTAAAAAGTTGTACAGCTCTTTATAGCTTGAACGTAGAGAACTGCTGTATCACGTCAAAAACTATTCAAGAAATGGCTGATGCATTGGACCCTGAATCTGTTCTTGCGCATCTTTGTATAGGTCACAACAGCCCTGTATCCGTAAATGTTTTAGTTAATCTTCTGTCCAAGCTTTCTACTTTGAAAAGGTTTTCTGAGTTGAATATGAGGGGTTTAAAACTAGGAAAACCAGTTGTCCATAGCCTTTGCCAGTTAGCTGGGACCTTGACTTTATCAGGACTGGTACTTGGAGGCACGGGTATTGGAACTGAAGGGGCTATAGAATTAGCAGAATCATTGGTCAAAGGGACAGAAGAGCTTGTGAAACTTGATCAATCATATTGTGGGCTAACATCTAAATATATTTTAAACACCAATGTTAACTTTCTTTGTTCCATTGTTGACCTGAACTTGGAAGGAAATCCTCTTATGCGCGAGGGCAGCAACACTCTATTTTCTCTTCTCACAAACACACAGTGCAGTCTCAAAGTTTTGGTCCTTAGAAAGTGTAAACTTGGGTGTGATGGAGTTCTTCACATAATTGAGGCACTGGCAGATAACAGCTGCTTGGAGGAGCTTGATCTTGCTGATAATTCTGTTCCAAATGAACTTTCTGCTCTGCAAAATGATTTATCAGTTAGAAGATGCTCACAAAACCAGGACCAGAAACTTGATAATATGAAAGTGGATGATCATCAAGAGGTCATTTGCTCTCTAAACACTGTCTGCAATCAGCTGGAAGTTGCTGATAGTGAAGATGAAGAATCTCCTTTCAGAGTAGAAGGTACTGCTTCTGGAATTGATGACAGCTGTGCCAGTTCAGGTCAAAGAAATTCTTCATCTCCTGAGTGCCATTTCACTAAACAGCTTTCCATTGCTATCGGTAAGGCAAGGAGCTTAGAACTACTGGACCTTAGTAATAATGGTTTTTCTGCACAAGTGGCGGAAGCATTCTATGGTTCATGGAAAACTCTACGACCCCTTTCAAGTCAGAAGCACATCACTGGGAAAATTATCCATTTATCAACGAATGAAAGGAGGTGCTGCGGAGTAAAACCATGCTGCAAAAAGGATTGA 3951 0.4065 MDTDLKSAKSAYRNAKAEGNHQEEARWANVIGDIYKNRGEYTEALTWLKVDYRISLKHLTEKHLLPTCQSLGEIYLRLERFSDALTYQKKHLDLAKEASDLVEQQRASTQLGRTYLELFTKSEYDHHSIRKAKKYFKSAMDLAMTLKENRPNNKSYLKEYIDAHNNMGMLEVELENWHDAMSILVKGLKICDEEEISDNDDGRSRLHHNLGRVYMELRAWDKARKHMEKDIHICNRIGHRQGEAKGYINLGEMHYRIQMYEEANSYYEKALTLVRILEDEEALMEQCNENIKIVKEAVKVMKAITREEQNLKKLKRDKTNARGTPDEQKFLVLQNETLDRLIEKAGMIFAWEKHCEFAKEKKKIAKELYNEERLGDSYLNIGESYQKLRKFNKAIKWYKKSWEQFIQHANLEGQALVKINIGNILDSTQNWRGALDAYQDSYRIAVEAKLPDVQINALENMHYSNMIRFDNEDETWRLKLLIDKLKKPEEEPEAKTMPEDRCSETDTEADHLSDGGSDDFCIPKTISRSKSRTTGEEFTDDVPLMSIYQSIKGSSKKNTDHMDSLTNSSKQAQLSPKSMTNLTSSHQTANNRKRVLVISDDEEEYLSRKDHKCLIEDFPTSDAIINKASPRKVQVVSEYRSKYPINVEESSSSFKCSSPITAAKSSRHSGSLSNDIIAEADFPSGSKCDIDSSGKYKGVAHPLVQYPQNDLQQHITCRIGNDLIHVEAALCTADDQLNIDLLKAVVPCLYYLQLPAEKRSEGLLPIIQHIKCAGRDLESLEPIEKLKEHLGNDTFEASIEGCVQKRLIKIYVDCCTELSKVPNIKVLKKLYNLEVSDDEIVVSDCDLQDLSITPLINALQSQKEFAMLDISHNLLGNGVMEKLKKVFSALNQSYGGLTLDLHCNRFGPTALFQISECSALFTRLGVLNISGNRLTDACRSYLLTILKSCTALYSLNVENCCITSKTIQEMADALDPESVLAHLCIGHNSPVSVNVLVNLLSKLSTLKRFSELNMRGLKLGKPVVHSLCQLAGTLTLSGLVLGGTGIGTEGAIELAESLVKGTEELVKLDQSYCGLTSKYILNTNVNFLCSIVDLNLEGNPLMREGSNTLFSLLTNTQCSLKVLVLRKCKLGCDGVLHIIEALADNSCLEELDLADNSVPNELSALQNDLSVRRCSQNQDQKLDNMKVDDHQEVICSLNTVCNQLEVADSEDEESPFRVEGTASGIDDSCASSGQRNSSSPECHFTKQLSIAIGKARSLELLDLSNNGFSAQVAEAFYGSWKTLRPLSSQKHITGKIIHLSTNERRCCGVKPCCKKD* 1317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0617 1316 PANTHER PROTEIN TONSOKU 2 1316 IPR044227 GO:0005634|GO:0006325|GO:0009933|GO:0040029|GO:0072423
Lja4g0617 1316 SUPERFAMILY TPR-like 132 281 IPR011990 GO:0005515
Lja4g0617 1316 Gene3D Tetratricopeptide repeat domain 332 466 IPR011990 GO:0005515
Lja4g0617 1316 SMART LRR_RI_2 1117 1144 - -
Lja4g0617 1316 SMART LRR_RI_2 1088 1115 - -
Lja4g0617 1316 SMART LRR_RI_2 1033 1060 - -
Lja4g0617 1316 SMART LRR_RI_2 921 948 - -
Lja4g0617 1316 SMART LRR_RI_2 1255 1282 - -
Lja4g0617 1316 SMART LRR_RI_2 949 976 - -
Lja4g0617 1316 SMART LRR_RI_2 1145 1171 - -
Lja4g0617 1316 ProSiteProfiles TPR repeat region circular profile. 244 273 - -
Lja4g0617 1316 ProSiteProfiles TPR repeat profile. 244 277 IPR019734 GO:0005515
Lja4g0617 1316 SUPERFAMILY TPR-like 356 448 IPR011990 GO:0005515
Lja4g0617 1316 Pfam Tetratricopeptide repeat 204 275 - -
Lja4g0617 1316 SUPERFAMILY TPR-like 9 193 IPR011990 GO:0005515
Lja4g0617 1316 SMART tpr_5 244 277 IPR019734 GO:0005515
Lja4g0617 1316 SMART tpr_5 161 194 IPR019734 GO:0005515
Lja4g0617 1316 SMART tpr_5 415 448 IPR019734 GO:0005515
Lja4g0617 1316 SMART tpr_5 204 237 IPR019734 GO:0005515
Lja4g0617 1316 SMART tpr_5 375 408 IPR019734 GO:0005515
Lja4g0617 1316 SMART tpr_5 65 98 IPR019734 GO:0005515
Lja4g0617 1316 Gene3D Ribonuclease Inhibitor 814 1212 IPR032675 -
Lja4g0617 1316 Gene3D Tetratricopeptide repeat domain 157 316 IPR011990 GO:0005515
Lja4g0617 1316 SUPERFAMILY RNI-like 828 1286 - -
Lja4g0617 1316 Coils Coil 277 324 - -
Lja4g0617 1316 Pfam Tetratricopeptide repeat 376 400 IPR019734 GO:0005515
Lja4g0617 1316 MobiDBLite consensus disorder prediction 488 524 - -
Lja4g0617 1316 MobiDBLite consensus disorder prediction 553 588 - -
Lja4g0617 1316 Gene3D Tetratricopeptide repeat domain 2 156 IPR011990 GO:0005515
Lja4g0617 1316 MobiDBLite consensus disorder prediction 488 517 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0617 - - gmx:100805682 1872.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0617 4 5110138 5119721 Lja4g0617 4 5110138 5119721 ECH