Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0605 ATGAAAGGTGGAACGGTTCAGATAAGCTGGCACGAGGGAAAACCCGTCTTGTCCATCGATTTCCACCCTCCCTCCGCCACTCTCGCCACCGCTGGCGCCGATTTCGACATCAAGTTCTGGACGATTAAACCAGCTGGAGCACAGAAGAAGCAGATACCTTCAGTTTCCTATGTCAACAACCTTTCTTACCATAGCTCCGCTGTCAATGTCATTCGCTTCTCTCCTTCCGGGGAACTGCTAGCTTCTGGTGCTGACGCTGGTGAGATGTTAATATGGAAGTTACATTCTACAGATACTGGTCCGACATGGAAGGTTCTTAAGACGTTACGATCTCATATGAAGGACATTATGGACCTCGAGTGGTCTCCGGATGGCGCATATCTCATATCTGGATCAGTTGATAATTGTTGCATCATATGGGATGTTAACAAAGGAACTAACCTTCAGACATTGGATTCCCATGCACACTATGTTCAGGGGGTTGCTTGGGACCCTCTAGGGAAGTATGTTACTTCTCTTAGTTCTGACCGGACTTGCCGAATTTACATTAATAAGCCTCATAAATCAAAGGGCATTGAGAAAGCCAATTATGTTTGCCAGCATCTTATTTCCAAGGCAGAACAGCCATTGTTGAAGAATTCTAAGTTGACAAAATATCATCTCTTCCACGATGAGACATTACCATCTTTCTTCAGAAGATTAGCCTGGTCTCCTGATGGTTCATTTCTACTTGTGCCTGCAGGCTCTTACAAAATTAATACTGCCTCTGAAGCTGTCAATGCAGCTTACATATTTTCTAGAAAAGATCTTTCTCGGCCTGCCATACAACTTCCTTGTGCAAACAAACCTGTTGTAGCTGTCCGGTTCTGTCCCATATTTTTCAAACTTCGGGGAACAGACTCAGATGGGTTATTTAAGCTTCCATATCGCATTGTATTTGCCGTGGCCACTTTGAATTCATTGTATATTTTTGACACTGAGAACACTTCTCCAATAGCTATATTAGCTGGTCTTCATTATGCTACAATAACAGATATTACCTGGTCACCGGATGCTCGTTATTTGGCATTGTCCTCGCAAGATGGTTTCTGCTCTTTGGTGGAATTTGAAAATGATGAGCTTGGATCACCTTTCTCTTTATCAGAAGGAAAGGTCTCCTACAAGGATAGTACAAGCACCTTGCAGACAGCCAACAATGCTGTCATTATACCATCAGGGAAAGTTGTTACAGTTGAAGCAGAAAGCAGGAAAATGGAAGCAGAAGAGAAAACTGATGACATGGTCATTGAAGAATCTGCAGATATCGGTACAGTCATAGCAGAAAGCAGTAAAACTGTAACACAAAATAAGGTGGATGACATGATCATCGAGTCAACTGGGAATGTTAGCACGGTTATAGCAGATAGTAGGAAAAATGAAGCAGAAGCAAAAGCTGATGACATGGTCATTGAGGCAGCTAAGAATTTTGAAAGAGTTGCTGCAGATAGTAGGAAAGATGATGCCAAAGAGAAGGCTGATGACATGGTCATTGAGACAAGTGGGAGTACTGGAACTGCTGTATTAGACAGTGTAAAAACTGAAGCACAAGAAAAGGCAGAGAAGAATGTATGTAGTTCAGGTAGTGTAAATTTTGGAGAAGACAAGGAAGAGAAACAGTCAGATAATCCAGGTGGTAAACAATCTGAAGCAGTGGAGAAAGCAGAGAAACTGCAATCGAGTTCAGGGAAACAATTGTCCAATTCAAAGAGTACACCTGTATCAAATAAGCCAGCCAAGAAGCGTATTACTCCTATTGCAATCGATCCATGA 1809 0.4245 MKGGTVQISWHEGKPVLSIDFHPPSATLATAGADFDIKFWTIKPAGAQKKQIPSVSYVNNLSYHSSAVNVIRFSPSGELLASGADAGEMLIWKLHSTDTGPTWKVLKTLRSHMKDIMDLEWSPDGAYLISGSVDNCCIIWDVNKGTNLQTLDSHAHYVQGVAWDPLGKYVTSLSSDRTCRIYINKPHKSKGIEKANYVCQHLISKAEQPLLKNSKLTKYHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYKINTASEAVNAAYIFSRKDLSRPAIQLPCANKPVVAVRFCPIFFKLRGTDSDGLFKLPYRIVFAVATLNSLYIFDTENTSPIAILAGLHYATITDITWSPDARYLALSSQDGFCSLVEFENDELGSPFSLSEGKVSYKDSTSTLQTANNAVIIPSGKVVTVEAESRKMEAEEKTDDMVIEESADIGTVIAESSKTVTQNKVDDMIIESTGNVSTVIADSRKNEAEAKADDMVIEAAKNFERVAADSRKDDAKEKADDMVIETSGSTGTAVLDSVKTEAQEKAEKNVCSSGSVNFGEDKEEKQSDNPGGKQSEAVEKAEKLQSSSGKQLSNSKSTPVSNKPAKKRITPIAIDP* 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0605 602 PRINTS Beta G protein (transducin) signature 128 142 IPR001632 -
Lja4g0605 602 PRINTS Beta G protein (transducin) signature 109 125 IPR001632 -
Lja4g0605 602 PRINTS Beta G protein (transducin) signature 165 182 IPR001632 -
Lja4g0605 602 MobiDBLite consensus disorder prediction 544 566 - -
Lja4g0605 602 PANTHER CHROMATIN ASSEMBLY FACTOR 1 SUBUNIT B 1 602 IPR045145 GO:0006335
Lja4g0605 602 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 109 145 - -
Lja4g0605 602 MobiDBLite consensus disorder prediction 525 602 - -
Lja4g0605 602 MobiDBLite consensus disorder prediction 567 590 - -
Lja4g0605 602 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 61 96 - -
Lja4g0605 602 ProSiteProfiles Trp-Asp (WD) repeats profile. 109 150 IPR001680 GO:0005515
Lja4g0605 602 ProSiteProfiles Trp-Asp (WD) repeats profile. 61 102 IPR001680 GO:0005515
Lja4g0605 602 PANTHER CHROMATIN ASSEMBLY FACTOR 1 SUBUNIT B 1 602 - -
Lja4g0605 602 SMART WD40_4 2 41 IPR001680 GO:0005515
Lja4g0605 602 SMART WD40_4 144 183 IPR001680 GO:0005515
Lja4g0605 602 SMART WD40_4 54 93 IPR001680 GO:0005515
Lja4g0605 602 SMART WD40_4 102 141 IPR001680 GO:0005515
Lja4g0605 602 SMART WD40_4 328 368 IPR001680 GO:0005515
Lja4g0605 602 ProSiteProfiles Trp-Asp (WD) repeats profile. 151 182 IPR001680 GO:0005515
Lja4g0605 602 ProSitePatterns Trp-Asp (WD) repeats signature. 128 142 IPR019775 -
Lja4g0605 602 ProSiteProfiles Trp-Asp (WD) repeats profile. 16 43 IPR001680 GO:0005515
Lja4g0605 602 Pfam WD domain, G-beta repeat 10 40 IPR001680 GO:0005515
Lja4g0605 602 Pfam WD domain, G-beta repeat 103 141 IPR001680 GO:0005515
Lja4g0605 602 Pfam WD domain, G-beta repeat 145 182 IPR001680 GO:0005515
Lja4g0605 602 Gene3D - 4 249 IPR015943 GO:0005515
Lja4g0605 602 Gene3D - 250 411 IPR015943 GO:0005515
Lja4g0605 602 SUPERFAMILY WD40 repeat-like 9 366 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0605 Lja-Chr4 4992191 4996309 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0605 25 182 Miscellaneous Gene Families AT5G08390 27.215 2.20e-14 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0605 K10751 - gmx:100784411 882.093
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0605 4 4992191 4996309 Lja4g0605 4 4992191 4996309 ECH