Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0581 ATGGGACATGGAGGGTCGAGACATCATCATCATCATCATCATCATGGTCATTTATCCCAGCAACCTCCTTCATATGTTGGGAGTTCAGCCAATTCTAACTATCAATATCATAAACCATCTTCTGATGCTGGAACTTCAAAGAATACTAGACATCAACATAAGCAGCGCCCCAAGTATATAGCTGACAATTTCAGCTCATTGGATCAGGTTGTTTCTGCTCTGAGAGAAGCTGGTCTGGAATCTTCAAACTTAATACTCGGTATTGACTTCACCAAAAGCAATGAATGGACAGGCAAGCGTTCCTTCAATAACAAAAGCCTCCATCATATTGGTAGCACTCCTAATCCATATGAGCAAGCTATCTCTATCATTGGCCGTACTCTCTCTTCGTTTGATGAAGATAATCTGATACCATGTTTTGGATTTGGTGATGCATCTACACATGATCAGAATGTCTTCAGCTTTTTTCCTGATCATCGCTGTTGTAATGGTTTCGAGGAAGCACTTGCACGCTACAGAGAGATTGTTCCATGCTTAAAATTGTCAGGTCCAACATCATTTGCCCCAGTAATCGACGCAGCAATTAACACTGTGGAAAGAAGCAACGGTCAATATCATGTTCTTGTGATTATTGCTGATGGGCAGCTTAGTCCGCAAGAACAAGCAACTGTTCATTCTATCACAGCTGCAAGTCACTATCCTCTCTCAATTGTTTTGGTTGGAGTCGGAGATGGACCATGGAATGCAATGCATAATTTTGATGACAGCATGCCTGATCGCAAATTTGATAACTTCCAGTTTGTGAATTACACAAATATGATGTCTGAAAACAAAGAGACATCCAAGAAGGAAACCGCATTTGCACTTGCTGCCCTTATGGAAATTCCAATTCAGTATCGCATAGTCCAAAATCTACGAGTCCCCAAAGGAAAATCAAAAAGGTATCAAGCCAGAAAGCCTTGCCCTCCCCCTAAGGAGGTAGATCATGGTAATGCCTTACCAAAAGTGCCACAAAAGAAGGTAATAGATGACAATGCATTACCAGAAGTTCCAGACAAAAAAAGCTTAGGATCAGCTGAGCCGACCGCTTCAGATGCTACAGAATCAGTATGCCTTATTTGCCTCACCAATCCGAAGAACATGGCTTTTGGATGTGGTCATTTAACTTGCAAGGAGTGTGGTGTGACCTTATCTTCATGCCCTATGTGCCGGCAGCAAATTACAACTCGTCTCAAACTATACGCTTAA 1248 0.4191 MGHGGSRHHHHHHHHGHLSQQPPSYVGSSANSNYQYHKPSSDAGTSKNTRHQHKQRPKYIADNFSSLDQVVSALREAGLESSNLILGIDFTKSNEWTGKRSFNNKSLHHIGSTPNPYEQAISIIGRTLSSFDEDNLIPCFGFGDASTHDQNVFSFFPDHRCCNGFEEALARYREIVPCLKLSGPTSFAPVIDAAINTVERSNGQYHVLVIIADGQLSPQEQATVHSITAASHYPLSIVLVGVGDGPWNAMHNFDDSMPDRKFDNFQFVNYTNMMSENKETSKKETAFALAALMEIPIQYRIVQNLRVPKGKSKRYQARKPCPPPKEVDHGNALPKVPQKKVIDDNALPEVPDKKSLGSAEPTASDATESVCLICLTNPKNMAFGCGHLTCKECGVTLSSCPMCRQQITTRLKLYA* 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0581 415 MobiDBLite consensus disorder prediction 310 361 - -
Lja4g0581 415 PANTHER COPINE FAMILY PROTEIN 1 43 414 - -
Lja4g0581 415 SUPERFAMILY vWA-like 82 249 IPR036465 -
Lja4g0581 415 CDD RING-HC_RGLG_plant 370 414 IPR045317 GO:0061630|GO:0070534
Lja4g0581 415 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 357 415 IPR013083 -
Lja4g0581 415 SUPERFAMILY RING/U-box 370 410 - -
Lja4g0581 415 MobiDBLite consensus disorder prediction 1 18 - -
Lja4g0581 415 Pfam Zinc finger, C3HC4 type (RING finger) 368 409 - -
Lja4g0581 415 SMART VWA_4 81 280 IPR002035 -
Lja4g0581 415 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RGLG3 43 414 - -
Lja4g0581 415 ProSiteProfiles Zinc finger RING-type profile. 371 404 IPR001841 -
Lja4g0581 415 MobiDBLite consensus disorder prediction 21 46 - -
Lja4g0581 415 Pfam Copine 106 305 IPR010734 -
Lja4g0581 415 MobiDBLite consensus disorder prediction 1 59 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0581 Lja-Chr4 4850608 4854139 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0581 K16280 - gmx:100791316 592.038
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0581 4 4850608 4854139 Lja4g0581 4 4850608 4854139 ECH