Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0522 ATGGGAGAACCAAAGCGAACCCCTCTGTTGATCTTCGCGGTGCTCCTCGTGATTTCCACCTCTTCGTTGCAGTTTCTCTCCGCTTCCGATGATGCGATCTTCTACGAATCGTTCGATGAGGATTTCGAAGGACGTTGGATTGTCTCTCAGAAGGATGAATACAACGGTGCCTGGAAGCATGATAAGAGTGAGGGGCATGATGACTATGGACTTCTGGTCAGTGAGAAAGCAAGGAAGTATGCTATAGTTAAAGAACTTGATGAGCCTGTGAAGCTTAAAGATGAATCAGTTGTTCTTCAGTTTGAGACTCGCCTTCAGAATGGCCTTGAATGTGGTGGTGCATATCTGAAATATCTTCGACCACAGGAGGCTGGATGGAAATCCAAGGAATTTGACAACGAATCTCCATATTCTATCATGTTTGGTCCTGACAAGTGTGGGGCCACAAACAAGGTGCACTTCATTTTCAAGCATAAGAATCCCAAGAGCGGGGAGTATGTTGAACACCATCTCAAGTTTCCCCCATCTGTCCCGTCTGACAAACTATCTCATGTGTACACTGCCGTTTTGAAGCCAGACAATGAGTTGGAAATTCTAATTGATGGGGAACAAAAGAAGAAGGCAAATTTCTTATCTTCTGAGGATTTTGAGCCTTCTCTTATCCCTGCCAAGACAATTCCAGATCCTGATGATAAGAAACCTGAAGACTGGGATGAGAGAGAGAAAATTCCAGACCCAGATGCAGTAAAACCAGAGGACTGGGATGAGGATGCACCCATGGAAATTCTTGATGAAGAAGCCGAGAAACCTGAAGGATGGTTAGATGATGAGCCTGAGGAGATAGATGACCCAGATGCAACCAAACCAGAAGATTGGGACGAGGAGGAGGATGGTGAATGGGAAGCCCCGAAGATTGATAACCCAAAGTGTGAAGCAGCCCCTGGTTGTGGTGAGTGGAAGAGGCCAATGAAGAGGAATCCAGCTTATAAGGGAAAGTGGCATGCCCCACTAATTGATAATCCAGCATATAAGGGTATATGGAAGCCCCAGGATATTCCAAACCCTGACTACTTTGAACTTAAGAAACCCGACTTTGAGCCTATTGCTGCTATTGGTATTGAAATTTGGACAATGCAAGACGGTATATTGTTTGACAACATTTTGATTGCTCAAGATGATAAGATTGCAGCGTCCTATCGGGAGACTACATGGAAGCCCAAGTTTACCATTGAGAAAGAGAAACAGAAGGAAGAAGATGTGGAGACTGGATCAAGTGGTCTTGCTAGCTTCCAGAAGAAGGTATTTGACCTGCTATACAAGATCGCGGACATTCCCTTCCTGAGTGCCTACAAGCTTAAAATATATGATATCATTGAAAAGGGTGAAAAGCAACCGAATCTCACTATTGGAATTCTTGTATCCGTGGTGGTTGTCTTCTTGTCAATTTTCTTCAGGATCCTATTTGGTGGGAAGAAGCCGGCAACAAGGGTGGAGAAGACAAACACAGAAACATCCACTAACCAAGGCGGTGAACAGAGTGAAGAAAACAAAGAGGAGGAAACCGCTGCTCCCCCTGCCCGAAGGAGGGTAAGGCGAGATGATTGA 1605 0.4505 MGEPKRTPLLIFAVLLVISTSSLQFLSASDDAIFYESFDEDFEGRWIVSQKDEYNGAWKHDKSEGHDDYGLLVSEKARKYAIVKELDEPVKLKDESVVLQFETRLQNGLECGGAYLKYLRPQEAGWKSKEFDNESPYSIMFGPDKCGATNKVHFIFKHKNPKSGEYVEHHLKFPPSVPSDKLSHVYTAVLKPDNELEILIDGEQKKKANFLSSEDFEPSLIPAKTIPDPDDKKPEDWDEREKIPDPDAVKPEDWDEDAPMEILDEEAEKPEGWLDDEPEEIDDPDATKPEDWDEEEDGEWEAPKIDNPKCEAAPGCGEWKRPMKRNPAYKGKWHAPLIDNPAYKGIWKPQDIPNPDYFELKKPDFEPIAAIGIEIWTMQDGILFDNILIAQDDKIAASYRETTWKPKFTIEKEKQKEEDVETGSSGLASFQKKVFDLLYKIADIPFLSAYKLKIYDIIEKGEKQPNLTIGILVSVVVVFLSIFFRILFGGKKPATRVEKTNTETSTNQGGEQSEENKEEETAAPPARRRVRRDD* 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0522 534 MobiDBLite consensus disorder prediction 512 534 - -
Lja4g0522 534 MobiDBLite consensus disorder prediction 495 534 - -
Lja4g0522 534 ProSitePatterns Calreticulin family signature 1. 104 119 IPR018124 GO:0005509
Lja4g0522 534 SUPERFAMILY Concanavalin A-like lectins/glucanases 28 218 IPR013320 -
Lja4g0522 534 SUPERFAMILY P-domain of calnexin/calreticulin 220 359 IPR009033 GO:0005509|GO:0005515
Lja4g0522 534 PANTHER CALRETICULIN AND CALNEXIN 192 533 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Lja4g0522 534 Pfam Calreticulin family 34 389 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Lja4g0522 534 ProSitePatterns Calreticulin family signature 2. 139 147 IPR018124 GO:0005509
Lja4g0522 534 MobiDBLite consensus disorder prediction 226 256 - -
Lja4g0522 534 MobiDBLite consensus disorder prediction 257 301 - -
Lja4g0522 534 Gene3D Calreticulin/calnexin, P domain 219 363 IPR009033 GO:0005509|GO:0005515
Lja4g0522 534 MobiDBLite consensus disorder prediction 211 318 - -
Lja4g0522 534 ProSitePatterns Calreticulin family repeated motif signature. 281 293 IPR018124 GO:0005509
Lja4g0522 534 PRINTS Calreticulin signature 370 390 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Lja4g0522 534 PRINTS Calreticulin signature 233 246 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Lja4g0522 534 PRINTS Calreticulin signature 106 124 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Lja4g0522 534 PRINTS Calreticulin signature 281 303 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Lja4g0522 534 PRINTS Calreticulin signature 135 151 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Lja4g0522 534 PRINTS Calreticulin signature 338 357 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Lja4g0522 534 PANTHER - 192 533 - -
Lja4g0522 534 PANTHER - 11 193 - -
Lja4g0522 534 PANTHER CALRETICULIN AND CALNEXIN 11 193 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Lja4g0522 534 Gene3D - 34 399 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0522 Lja-Chr4 4278874 4282085 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0522 6 534 Miscellaneous Gene Families AT5G61790 75.000 0.0 803
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0522 K08054 - gmx:100785901 913.679
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0522 4 4278874 4282085 Lja4g0522 4 4278874 4282085 ECH