Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0506 ATGCTTTTCTCTACAGTCCTGTCCTGTCCCCATAGACAAGCCATGGCTGTAGTCAACCCCTCAATCATCTCTTCACTTCACATTGAAACCTCTCATGTTTTTCCAGTTTCACGGTCAACCTCATTCACTCCGACAAGGTGGGTTCCCCCCTTCAGATTGCTTTGTTTGAGTGGTAAAATGGACAATGTTAACGGTACAAGGATTAAAGAAGGAAGAACTATTCTGCATGATCTCTATGAGAAGCACGGACAGAGCCCTTACTATGACCATCTCTGTCGCCCTGTTTCTGATTTGCTGCCATTCATTGAGTCTGGAATCAGAGGTGTCACTACCAATCCAGCGATATTTGAAAAAGCTATATCATCATCAAATGCTTACAATGCACAGTTGAGGGAGCTGGTAGAGGCAGGGAAAGACATAGAAAATGCTTACTGGGAATTGGTTGTGAAGGACATACAGGATACTTGCAAGCTCTTGGAGCCAATTTACAATGAAAAGGATGGGGATGATGGGCATGTATCTCTTGCAGTTTCCCCCAAGCTTGCAAATGATACCAAAGGGACAATTGAGGCAGCAAAATGGCTTCATGAAATGGTTGGCTATCCAAATGTTTATATCAAAATTCCTGCAACTGAAAGATCCATCCCTTCTATAAAGGAAGTCATTTCTCTGGGGATAAGTGTGAATGTCACTCTCATATTCTGTCTCCATAGTTATGAAGCAGTCATTAATGCTTACCTGGATGGCCTTGAAGCTTCTGGCATGGCTGATCTCTCTAAGGTTTCAAGTGCAGCAGCTTTCTACATCAGTAGAGTGGATGTTACAATTGACAAGAAGCTTGAGCAAATTGGTACTCCTGAGGCTCTTGAACTCAGAGGAATGGCTGCGGTTGCTCAAGCAGTCTTAGCTTACCAGCTTTACCAGAAAATGTTTTCCGGTCCCCGGTGGGAGCACCTGGAGAGGAGAGGTGCCAAGAAGCAGAGGTTGATGTGGGCCTCAACAAATGTGAAGAATCCAGCTTACCCTGATACTTCTTATGTTGAATCTCTTATTGGACCAGATACGATTTCAACCATGCCAAGTCAAGCTTTTCAAGCATTCATGGACCATGGTGTTCTTTCAAGAACCATTGATGCAAATGTTTCAGAGGCCCAAGGCATTTACGATGCAATTGAGAGGTTGGGGATTGATTGGAATGCTGTTGGATCACAGCTGGAACATGAGGTGCTAGATTCATTCACAAAAAGCTTTGACAATGTGCTTCAATGCCTGCAAAAGAAGGCTAAATCTAGTGAATTCATCAGCCAATAG 1311 0.4363 MLFSTVLSCPHRQAMAVVNPSIISSLHIETSHVFPVSRSTSFTPTRWVPPFRLLCLSGKMDNVNGTRIKEGRTILHDLYEKHGQSPYYDHLCRPVSDLLPFIESGIRGVTTNPAIFEKAISSSNAYNAQLRELVEAGKDIENAYWELVVKDIQDTCKLLEPIYNEKDGDDGHVSLAVSPKLANDTKGTIEAAKWLHEMVGYPNVYIKIPATERSIPSIKEVISLGISVNVTLIFCLHSYEAVINAYLDGLEASGMADLSKVSSAAAFYISRVDVTIDKKLEQIGTPEALELRGMAAVAQAVLAYQLYQKMFSGPRWEHLERRGAKKQRLMWASTNVKNPAYPDTSYVESLIGPDTISTMPSQAFQAFMDHGVLSRTIDANVSEAQGIYDAIERLGIDWNAVGSQLEHEVLDSFTKSFDNVLQCLQKKAKSSEFISQ* 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0506 436 PANTHER TRANSALDOLASE 71 429 IPR001585 GO:0005975
Lja4g0506 436 Pfam Transaldolase/Fructose-6-phosphate aldolase 101 422 IPR001585 GO:0005975
Lja4g0506 436 CDD Transaldolase_like 85 418 IPR004732 GO:0004801|GO:0005737|GO:0006098
Lja4g0506 436 Hamap Transaldolase [tal]. 75 434 IPR004732 GO:0004801|GO:0005737|GO:0006098
Lja4g0506 436 Gene3D Aldolase class I 73 429 IPR013785 -
Lja4g0506 436 PANTHER TRANSALDOLASE-RELATED 71 429 - -
Lja4g0506 436 ProSitePatterns Transaldolase signature 1. 108 116 IPR018225 GO:0005975
Lja4g0506 436 SUPERFAMILY Aldolase 82 427 - -
Lja4g0506 436 PIRSF Trnald_Bac_Plnt 63 435 IPR004732 GO:0004801|GO:0005737|GO:0006098
Lja4g0506 436 TIGRFAM tal_mycobact: transaldolase 97 422 IPR004732 GO:0004801|GO:0005737|GO:0006098
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0506 Lja-Chr4 4129880 4132638 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0506 K00616 - gmx:100811673 608.986
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0506 4 4129880 4132638 Lja4g0506 4 4129880 4132638 ECH