Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0502 ATGGGTAACTGCTTCTCCGACGTCGCCGGTGGCCGTACAGCAATCGGCGGCACCGCCGGCGGCATGCTCAGGCCATCAGATGCTCCCAACGACGCCATCGACAACTTCCTCAGGTCTCGCGGCTACAACGGCCTCTTCTCTCAGATCGAGTTGTCGTTTTCTGCTTCTGGCTTGCGTGATCGCGATGTGCTCTCCAAGAGTGATCCGATGATGGTTCTATATGCAAGAGGGAAAAATGGAGCACTTGAGGAACTTTGTCGGACGGAAGTAGTTCTGAATTCATTGAGACCTACATGGATTACTAAACACACTCTCATTTATCATTTTGAGGTTGTTCAGTTTTTAGTGTTTCGCGTGTATGATGTTGATACTCAGTTTCACAATGCAGATGTCAAGATCCTTAAGCTAGAAGAGCAGCAATATCTAGGAGAGGCAACCTGTGCATTATCCCAGATAATTACAAAGCCTGATCGGTCAATGACATTAGATTTACAAAGAGATTCTATGAGATCTAGCCCCTCCCTAAACTGTGGGAAGCTCTTGGTGCATGCTGAGGAATCTATTAGCTCAAAAACTTCAATAGAGATGATACTTAGATGTTCAGATTTGGAATATAGGGATCTCTTCTCAAAAAGTGATCCCTTTCTATTGATATCAAAAGTCGTGGAAGGTGGTACCCATGTTCCAATTTGCAAAACAGAAGCTATAAAGAATGATCACAGCCCAACGTGGAAGCCAGTGTACTTGAATATTCAACAAGTAGGAAGCAAGGAAAATCCTTTGGTAATAGAGTGCTATAACTTTAATAGCAATGGCAGACATGATTTGATGGGAAAAGTGCAGAAATCTTTGGTGGATTTGGAGAAGCTTCATTTCGGTGGCCAAGGAGAAAATTTATTCTTGTCTGCAGCTGTTGGTCATAATTCTCAAAACAAGGTGTTGAAGAGCAGGCTATTTGTGGATAAATTTTCTGAAAGTGTCCAATATACTTTCCTGGATTACTTGGCTGGGGGATTTGAGTTGAACTTCATGGTGGCCATTGATTTTACTGCTTCAAATGGAAACTCACGCCTTCCTGATTCTTTGCATTATATTGATCCTTCAGGACGGCCAAATGCATACCAGAGGGCAATTGTTGAGGTTGGGGAGGTGCTACAGTTTTATGATTCAGACAAGAGATTTCCTACATGGGGATTTGGAGCACGACCAATTGATGGTCCTGTTTCCCATTGTTTCAACTTGAATGGAAGCAATAATTACTGTGAGGTGGACGGCATCCAAGGTATTATGATGGCATACACAAGTGCCCTGCTTAACGTTTCTCTTGCAGGACCAACTCTTTTTGGACCTGTCATAAGTAATGCTGCACTTATTGCCAGCCAATCTGTAGCAAATGGTGGAAGAAAGTACTTTGTTTTGTTAATAATCACAGATGGAGTTGTGACGGATCTTCAAGAAACAAAAGATGCTCTCGTCAAAGCATCTGACCTACCATTATCCATCCTTATTGTTGGTGTAGGAGGAGCTGATTTCAAAGAAATGGAGCAGATTTTGGATGCTGACAAAGGAGATAGGCTTGAAAGTTCGTACGGACGCATTGCTTCACGTGATATAGTCCAGTTTGTTCCATTTCGGGATGTTCAAAGTGGTGAAATTTCAGTAGTTCAAGCACTTCTAGCAGAACTACCTACTCAATTTTTAGCTTACATGCGGAGCAGAGATATCCAACCAAGTCTCTAG 1740 0.4276 MGNCFSDVAGGRTAIGGTAGGMLRPSDAPNDAIDNFLRSRGYNGLFSQIELSFSASGLRDRDVLSKSDPMMVLYARGKNGALEELCRTEVVLNSLRPTWITKHTLIYHFEVVQFLVFRVYDVDTQFHNADVKILKLEEQQYLGEATCALSQIITKPDRSMTLDLQRDSMRSSPSLNCGKLLVHAEESISSKTSIEMILRCSDLEYRDLFSKSDPFLLISKVVEGGTHVPICKTEAIKNDHSPTWKPVYLNIQQVGSKENPLVIECYNFNSNGRHDLMGKVQKSLVDLEKLHFGGQGENLFLSAAVGHNSQNKVLKSRLFVDKFSESVQYTFLDYLAGGFELNFMVAIDFTASNGNSRLPDSLHYIDPSGRPNAYQRAIVEVGEVLQFYDSDKRFPTWGFGARPIDGPVSHCFNLNGSNNYCEVDGIQGIMMAYTSALLNVSLAGPTLFGPVISNAALIASQSVANGGRKYFVLLIITDGVVTDLQETKDALVKASDLPLSILIVGVGGADFKEMEQILDADKGDRLESSYGRIASRDIVQFVPFRDVQSGEISVVQALLAELPTQFLAYMRSRDIQPSL* 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0502 579 ProSiteProfiles C2 domain profile. 176 300 IPR000008 -
Lja4g0502 579 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 197 288 IPR035892 -
Lja4g0502 579 Gene3D C2 domain 52 195 IPR035892 -
Lja4g0502 579 PANTHER PROTEIN BONZAI 2 1 578 IPR031116 GO:0005544|GO:0060548
Lja4g0502 579 SUPERFAMILY vWA-like 340 526 IPR036465 -
Lja4g0502 579 ProSiteProfiles VWFA domain profile. 342 562 IPR002035 -
Lja4g0502 579 CDD C2A_Copine 47 164 - -
Lja4g0502 579 Pfam Copine 361 577 IPR010734 -
Lja4g0502 579 Gene3D C2 domain 196 318 IPR035892 -
Lja4g0502 579 ProSiteProfiles C2 domain profile. 28 162 IPR000008 -
Lja4g0502 579 SMART VWA_4 340 538 IPR002035 -
Lja4g0502 579 SMART C2_3c 197 299 IPR000008 -
Lja4g0502 579 SMART C2_3c 48 161 IPR000008 -
Lja4g0502 579 CDD C2B_Copine 194 289 IPR037768 -
Lja4g0502 579 CDD vWA_copine_like 310 566 IPR010734 -
Lja4g0502 579 Pfam C2 domain 54 155 IPR000008 -
Lja4g0502 579 Pfam C2 domain 197 287 IPR000008 -
Lja4g0502 579 PANTHER COPINE 1 578 IPR045052 GO:0005544
Lja4g0502 579 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 53 164 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0502 Lja-Chr4 4102580 4107836 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0502 - - gmx:100807801 1010.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0502 4 4102580 4107836 Lja4g0502 4 4102580 4107836 ECH