Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0490 ATGATCATCATCATCGTAATTCACACACCACGCTTCTTCACATTCATACTTAACGTTGTTGTTGTTGTTGTTGTTGTTCTTGAAACGAAGACCGCACTTTATCTTCTTGTTCTGGTTACTCTCTCCTTCCTCCTCGCCGGACCGTACAATCACCTTCACCCTCTTTTCGGAGAGGGCCATATCCACCCACCCCTCTCTCTCTCTCTCTCTCTATTCTTTCTTCTCTCTCAATTTTTTAGTACCAAGTATTCCAGGGTTTCTGCGAGCAATTCAGGAATCATGTCTAGGGTTTTGGCTCAGTCAATTACTATCCCTGGCTTAGTGTGTGGGCGAAGTCATGGTCATAATAACAGGTCCACAATGTCGAGAAGATCTCTAAAAATGATGTCTACCTTACAAGCACCTGCGTTAAGAATGTCAGGATTCTCAGGACTGCGTACTTATAATAATTTGGATACAATGTTGAGACCTGGACTAGATTTTCGTTCTAAGGTGTTTGGTGTAACTACCTCCCGAAAGGCAAGGGCTAGCAGATGCATACCTAAAGCCATGTTTGAGCGTTTCACGGAGAAAGCAATCAAGGTTATTATGCTTTCCCAGGAGGAGGCGAGACGGCTGGGTCATAATTTTGTTGGAACAGAACAGATCCTGTTGGGTCTTGTTGGTGAAGGCACTGGTATTGCTGCTAGGGTTTTGAAGGCTATGGGGATTAGCCTTAAAGATGCACGCGTGGAAGTGGAAAAGACCATTGGAAGGGGTAGTGGATTTGTTGCTGTTGAGATTCCATTTACTCCTCGTGCAAAGCGTGTTTTGGAACTCTCACTGGAGGAGGCTCGTCAGCTTGGTCACAACTATATTGGGTCTGAGCACTTGCTTTTGGGTCTTCTTCGAGAGGGTGAGGGTGTAGCAGCACGTGTTCTTCAAGACCTGGGTGCTGATCCTAACAATATTCGCGCTCAGGTTATTCGCATGGTTGGTGAGAGTAACAATGAAACGGCTGGGGTTGCTGTTGGCCGCGGAGGTAGTAGCAATAAGATGCCAACTTTGGAGGAGTATGGAACCAATTTGACCAAGCTAGCAAATGAGGGAAAATTGGACCCTGTTGTGGGTAGGCAGCAACAAATTGAACGTGTCATTCAAATTTTGGGTCGTCGTACCAAAAATAATCCTTGTCTTGTCGGCGAGCCTGGTGTTGGAAAGACAGCTATTGCCGAAGGTCTTGCTCAACGGATTGCAACTGGTGATGTCCCTGAAACCATAGAGGGAAAGGAGGTAATAACCCTTGATATGGGTCTACTTGTTGCTGGAACTAAATATCGTGGAGAATTTGAGGAGAGGTTGAAGAAGCTAATGGAGGAAATCAAACAAAACGATAATATAATACTTTTCATTGATGAAGTTCACACACTAATTGGAGCTGGAGCAGCTGAAGGGGCGATTGATGCTGCAAACATATTAAAACCCGCTCTTGCCAGAGGGGAACTACAGTGTATAGGAGCCACAACACTGGATGAATACAGGAAGCACATTGAAAAAGATCCAGCTTTGGAAAGGCGATTCCAGCCAGTTAGAGTGCCGGAGCCAACCGTGGATGAATCCATACAAATACTGAGAGGACTTAGAGAACGCTATGAGAGGCACCACAAGCTCAGTTATACAGATGATGCTCTTGTAGCTGCTTCACAGCTGTCACATCAATATATCAGTGATCGGTTTTTGCCTGACAAAGCTATCGATTTGATTGATGAAGCTGGTTCCCGAGTCCGTCTTCGACATGCACAGTTACCTGAAGAAGCAAGAGAGCTTGACAAGGAGGTCAGGCAGATTGTGAAGGAGAAAGATGAAGCTGTTCGCAACCAAGACTTTGAAAAGGCTGGAGAGCTGCGAGACAGAGAAATGGATCTTAAGACACAGATCTCAGCACTTATAGAAAAAGGCAAGGAGATGAGTAAGGCAGAGAGTGAGGCCGATGGTGCAGGTCCAGTTGTGACTGAAGTTGACATACAACATATTGTGGCCTCCTGGACTGGTGTTCCTGTTGACAAAGTATCGTCAGATGAATCTGATCGCCTTCTCAAGATGGAAGAGACATTACACAAGCGAGTTATTGGTCAGGATGAAGCAGTAAAAGCCATTTGCAGGGCTATCCGTCGAGCCCGGGTTGGACTGAAGAACCCTAATCGTCCAATTGCAAGCTTTATCTTTTCTGGGCCAACTGGTGTGGGGAAGTCCGAGTTGGCCAAAACACTGGCTTCATACTACTTTGGTTCTGAAGAGGCCATGATTCGGCTTGACATGAGTGAATTTATGGAAAGGCACACAGTGTCCAAGCTCATCGGTTCACCTCCTGGATATGTTGGTTACACTGAGGGTGGTCAACTGACTGAAGCAGTCCGACGCCGTCCCTACACTGTTGTACTCTTTGATGAGATTGAGAAAGCCCATCCTGATGTATTCAACATGATGCTTCAGATCCTGGAAGATGGAAGGCTAACAGACAGTAAGGGGAGAACTGTGGACTTCAAGAACACCCTTCTTATAATGACATCGAACGTTGGAAGCAGCGTGATTGAGAAAGGAGGACGTAAAATAGGATTTGACCTTGATTATGATGAGAAGGACAGCTCTTATAATCGAATCAAGAGCTTGGTGACTGAGGAGCTAAAGCAGTACTTTAGGCCTGAGTTTTTGAATAGGTTGGACGAAATGATTGTTTTCAGGCAACTCACAAAGCTGGAGGTGAAGGAGATAGCTGATATAATGCTGAAGGAGGTATTTGACAGACTGAAAACCAAAGAAATTGATCTTTCAGTGACAGAGAGATTTAGGGATAGAGTGGTTGAAGAAGGTTATGATCCTAGTTATGGGGCAAGGCCTCTAAGACGAGCCATAATGCGGCTCTTGGAGGACAGCATGGCAGAGAAGATGCTTGCTGGAGAGATTAAAGAGGGTGACTCTGTTATAATTGATGCTGATTCTGATGGTAAGGTGATTGTGCTCAATGGTAGTAGTGGTGCACCAGAATCACTGCCAGAGGCTCTTCCTGTGTAA 3051 0.4546 MIIIIVIHTPRFFTFILNVVVVVVVVLETKTALYLLVLVTLSFLLAGPYNHLHPLFGEGHIHPPLSLSLSLFFLLSQFFSTKYSRVSASNSGIMSRVLAQSITIPGLVCGRSHGHNNRSTMSRRSLKMMSTLQAPALRMSGFSGLRTYNNLDTMLRPGLDFRSKVFGVTTSRKARASRCIPKAMFERFTEKAIKVIMLSQEEARRLGHNFVGTEQILLGLVGEGTGIAARVLKAMGISLKDARVEVEKTIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSEHLLLGLLREGEGVAARVLQDLGADPNNIRAQVIRMVGESNNETAGVAVGRGGSSNKMPTLEEYGTNLTKLANEGKLDPVVGRQQQIERVIQILGRRTKNNPCLVGEPGVGKTAIAEGLAQRIATGDVPETIEGKEVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQNDNIILFIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLDEYRKHIEKDPALERRFQPVRVPEPTVDESIQILRGLRERYERHHKLSYTDDALVAASQLSHQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELDKEVRQIVKEKDEAVRNQDFEKAGELRDREMDLKTQISALIEKGKEMSKAESEADGAGPVVTEVDIQHIVASWTGVPVDKVSSDESDRLLKMEETLHKRVIGQDEAVKAICRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKTLASYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRKIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKEIDLSVTERFRDRVVEEGYDPSYGARPLRRAIMRLLEDSMAEKMLAGEIKEGDSVIIDADSDGKVIVLNGSSGAPESLPEALPV* 1017
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0490 1016 Gene3D - 531 675 - -
Lja4g0490 1016 CDD AAA 369 521 - -
Lja4g0490 1016 SMART AAA_5 729 910 IPR003593 -
Lja4g0490 1016 SMART AAA_5 386 526 IPR003593 -
Lja4g0490 1016 Pfam C-terminal, D2-small domain, of ClpB protein 909 988 IPR019489 -
Lja4g0490 1016 Gene3D - 338 529 IPR027417 -
Lja4g0490 1016 PANTHER ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPA HOMOLOG CD4B, CHLOROPLASTIC 168 1016 - -
Lja4g0490 1016 SMART ClpB_D2_small_2 909 999 IPR019489 -
Lja4g0490 1016 Gene3D - 909 1006 - -
Lja4g0490 1016 Pfam AAA lid domain 530 630 IPR041546 -
Lja4g0490 1016 ProSitePatterns Chaperonins clpA/B signature 2. 763 781 IPR028299 -
Lja4g0490 1016 Coils Coil 599 619 - -
Lja4g0490 1016 Pfam ATPase family associated with various cellular activities (AAA) 391 507 IPR003959 GO:0005524|GO:0016887
Lja4g0490 1016 Gene3D - 681 907 IPR027417 -
Lja4g0490 1016 Gene3D UVR domain 595 659 - -
Lja4g0490 1016 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 346 625 IPR027417 -
Lja4g0490 1016 ProSitePatterns Chaperonins clpA/B signature 1. 481 493 IPR018368 GO:0005524
Lja4g0490 1016 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 678 995 IPR027417 -
Lja4g0490 1016 Pfam Clp amino terminal domain, pathogenicity island component 199 251 IPR004176 -
Lja4g0490 1016 Pfam Clp amino terminal domain, pathogenicity island component 275 326 IPR004176 -
Lja4g0490 1016 PANTHER ATP-DEPENDENT CLP PROTEASE 168 1016 - -
Lja4g0490 1016 SUPERFAMILY Double Clp-N motif 186 329 IPR036628 -
Lja4g0490 1016 Gene3D - 184 334 IPR036628 -
Lja4g0490 1016 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 778 796 IPR001270 GO:0005524
Lja4g0490 1016 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 807 825 IPR001270 GO:0005524
Lja4g0490 1016 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 733 751 IPR001270 GO:0005524
Lja4g0490 1016 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 840 854 IPR001270 GO:0005524
Lja4g0490 1016 ProSiteProfiles UVR domain profile. 603 638 IPR001943 GO:0005515
Lja4g0490 1016 Coils Coil 440 460 - -
Lja4g0490 1016 Pfam AAA domain (Cdc48 subfamily) 728 902 IPR003959 GO:0005524|GO:0016887
Lja4g0490 1016 CDD AAA 703 851 - -
Lja4g0490 1016 ProSiteProfiles Clp repeat (R) domain profile. 185 327 IPR004176 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0490 Lja-Chr4 3991586 3997806 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0490 K03696 - gmx:100796195 1594.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4361 1 56317813 56325157 Lja4g0490 4 3991586 3997806 ECH
Lja4g0490 4 3991586 3997806 Lja4g0490 4 3991586 3997806 ECH
Lja4g0490 4 3991586 3997806 Lja1g4361 1 56317813 56325157 PCT