Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0471 ATGCCGGAAGAGGACTTGGTTGACATCAAGTTTAGGTTGTACGATGGCTCCGATATCGGGCCTTTCAGGTACTCCTCCGCCGCCACCGTCGACATGCTTAAGCAAAGGGTTGTCTCTGATTGGCCCAAAGGTAAGACAGTCATACCAAAGTCAGCAAATGAAGTGAAATTGATTAGTTCTGGTAAAATCTTGGAAAACAACAAGACTGTTGGTCAGTGTAAAGTCCCATTTGGTGAGACTGCAGGGGGTGTTATCATGCATGTTGTTGTACAGCCATCTCTAGCAAAATCTAAAGCTGAAAAGAAGGTTGATGATTCTCCCAAGAAGGTCGTCTGTTCTTGTTCCATATTGTGA 354 0.4463 MPEEDLVDIKFRLYDGSDIGPFRYSSAATVDMLKQRVVSDWPKGKTVIPKSANEVKLISSGKILENNKTVGQCKVPFGETAGGVIMHVVVQPSLAKSKAEKKVDDSPKKVVCSCSIL* 118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0471 117 CDD Ubl_MUBs_plant 6 92 - -
Lja4g0471 117 PIRSF MUB 1 117 IPR017000 -
Lja4g0471 117 ProSiteProfiles Ubiquitin domain profile. 7 75 IPR000626 GO:0005515
Lja4g0471 117 PANTHER UBIQUITIN-LIKE PROTEIN 3 HCG-1 PROTEIN 1 117 IPR040015 -
Lja4g0471 117 Gene3D - 1 99 - -
Lja4g0471 117 PANTHER MEMBRANE-ANCHORED UBIQUITIN-FOLD PROTEIN 3 1 117 - -
Lja4g0471 117 SUPERFAMILY Ubiquitin-like 2 96 IPR029071 -
Lja4g0471 117 Pfam Ubiquitin-2 like Rad60 SUMO-like 6 115 IPR039540 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0471 Lja-Chr4 3846327 3851219 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0471 - - gmx:100810070 226.483
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0471 4 3846327 3851219 Lja4g0471 4 3846327 3851219 ECH