LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja4g0423	ATGGTGACTCGACGGTTGGCTCAGATTGCAACCAGCGACGACGACGAAGACGAAGCACCCAAGCAAGAGTCTCTCGAAGCGAAGCAGCAGCGGAAGAGGAAGAGGATGAAGCTGCAGGAATATGAAGATGAAGAAGCTGAAGTAGTAGTAGAAGAAGAGGATGAAGAGAAGAAGAAGAACCAGAGAAATCCCCCTACATCTGACGCAGAAGAAGAGCAGGACGCGCCACTGGAGGATGCTAAGCCTGTTGGCGAATCAATTAGGGTTTCTGGAAAAGGTAGAGGCAGAAAGAGGCATTTTCACTGCTTCGAGTTTGATGGAAACCAATACGCACTGGAGGACCCTGTACTTCTCGTGCCCGAGGGTGAAGATCAAAAGCCGTACGTGGCAATTATTAAGGACATTGCACAATCTGTAAATGGCAGCATAATGGTCACAGGGCAATGGTTTTACCGTCCTGAAGAAGCAGAAAAAAAAGGCGGTGGCAGTTGGCAATCATGTGATGCAAGGGAGCTCTTTTACAGTTTCCACCGTGATGATGTTCCTGCAGAATCCGTCATGCATAAGTGTGTGGTGCATTTTGTTCCCATACACAAACAGCTTCCGAATCGTAAGCAGCATCCCGGGTTTATTGTGCGAAAGGTGTACGACACAGTAGAAAGGAAACTCTGGAAGCTAACTGATAAGGACTATGAGGACGGTAAACAGCAAGAAATTGATGAGCTTGTTCAGAAAACCCTTGAACGTTTGGGTGAACTACCTGACATCGAAACGGATGAAGCTCTTGCTGATCAGGAAGATCTGACAAAAAATAAAAGAATGATGAGAAAAAAGAGCATTTCACCTCTCGATGTTTCAAAGGAAGAAACAGCTCGAAAGAGTGACCAACCTCTGAAACCTGATACACCATTGAGCTGTGTAAATAATGCCTCAGAGCATTACCGCATACTAGTGGGTTTCAATGCACTAACAGGAGATACCCATCGTGACAAAGGTTTGGAGAAGTTACTTCAAAGTGTTCAATACATGTTTGATAACAATGGTAGCATGAAGAATGAAGAAAAGGTTAATGACAATTCTGATGACATAAAAAATGGAAGCAGTAACAGAGGTTCAGAATCAGCAAATGAATATAAAGACAAGGTTCAAAAGAGTTCCAAGCCTTTGATCTGGCCAGGTGTTGCTGTTTCAGCTGTAGCTGCTCTGGAAAAAGCTTCACATGATGCTCTTTCATCAGATTATCAGAAGTACAACCAAAAGCTACGACAATTAGTATTCAATCTCAGGAACAATGCATTCCTAGCACGGCGTCTATTGAATGGAGAGTTGGAACCTTCGAAAATATTGAATATGACACCTGCTGAGTTGAAGGAGGGTTTGACTGCGGAAGAAATAACCAAGACAGAGCCTGAGGAGTCAGAGCAGATGCAGATGACAGATGCCCTCTGCAGTGTTTGCTCGGAGCGTAAGGCGGGTGTGAGGGATATTATCCGCGCAGGACATTTTGACCGATACAAGCTGGAGTGCATTGCCTGTGGTCATTCCTGGTACGCCTCTCGTGATGCGGTCTCCGTGCTGACATCAGATCCATCAGATTCTTTTCTTTTTTAG	1611	0.4488	MVTRRLAQIATSDDDEDEAPKQESLEAKQQRKRKRMKLQEYEDEEAEVVVEEEDEEKKKNQRNPPTSDAEEEQDAPLEDAKPVGESIRVSGKGRGRKRHFHCFEFDGNQYALEDPVLLVPEGEDQKPYVAIIKDIAQSVNGSIMVTGQWFYRPEEAEKKGGGSWQSCDARELFYSFHRDDVPAESVMHKCVVHFVPIHKQLPNRKQHPGFIVRKVYDTVERKLWKLTDKDYEDGKQQEIDELVQKTLERLGELPDIETDEALADQEDLTKNKRMMRKKSISPLDVSKEETARKSDQPLKPDTPLSCVNNASEHYRILVGFNALTGDTHRDKGLEKLLQSVQYMFDNNGSMKNEEKVNDNSDDIKNGSSNRGSESANEYKDKVQKSSKPLIWPGVAVSAVAALEKASHDALSSDYQKYNQKLRQLVFNLRNNAFLARRLLNGELEPSKILNMTPAELKEGLTAEEITKTEPEESEQMQMTDALCSVCSERKAGVRDIIRAGHFDRYKLECIACGHSWYASRDAVSVLTSDPSDSFLF*	537

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lja4g0423	536	MobiDBLite	consensus disorder prediction	9	43	-	-
	Lja4g0423	536	CDD	BAH_plant_3	90	236	-	-
	Lja4g0423	536	Gene3D	-	309	458	IPR036575	GO:0006351
	Lja4g0423	536	MobiDBLite	consensus disorder prediction	270	306	-	-
	Lja4g0423	536	Coils	Coil	24	61	-	-
	Lja4g0423	536	PANTHER	BROMO-ADJACENT HOMOLOGY (BAH) DOMAIN-CONTAINING PROTEIN	1	531	-	-
	Lja4g0423	536	Gene3D	-	15	209	IPR043151	-
	Lja4g0423	536	MobiDBLite	consensus disorder prediction	270	296	-	-
	Lja4g0423	536	ProSiteProfiles	TFIIS central domain profile.	328	484	IPR003618	GO:0006351
	Lja4g0423	536	MobiDBLite	consensus disorder prediction	1	92	-	-
	Lja4g0423	536	PANTHER	BROMO-ADJACENT HOMOLOGY (BAH) DOMAIN-CONTAINING PROTEIN	1	531	-	-
	Lja4g0423	536	SMART	BAH_4	108	227	IPR001025	GO:0003682
	Lja4g0423	536	Pfam	BAH domain	109	225	IPR001025	GO:0003682
	Lja4g0423	536	MobiDBLite	consensus disorder prediction	52	69	-	-
	Lja4g0423	536	SMART	mid_6	361	466	IPR003618	GO:0006351
	Lja4g0423	536	MobiDBLite	consensus disorder prediction	348	381	-	-
	Lja4g0423	536	Pfam	Transcription factor S-II (TFIIS), central domain	324	476	IPR003618	GO:0006351
	Lja4g0423	536	SUPERFAMILY	Elongation factor TFIIS domain 2	391	457	IPR036575	GO:0006351
	Lja4g0423	536	ProSiteProfiles	BAH domain profile.	108	227	IPR001025	GO:0003682

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lja4g0423	Lja-Chr4	3443588	3448186	Dispersed/Transposed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lja4g0423	-		-	lja:Lj4g3v2962330.1	881.322

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lja4g0423	4	3443588	3448186	Lja4g0423	4	3443588	3448186	ECH