Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0414 ATGGCGTTGCCATTTCTTACTCTTCCATCCTTTTTTCACACCTCCAATTCCATAACTGCAACCTTCGCTCCTCCTTCCACACGCTTCCGTTCACACTCCTACCGCCTCCGACCTCCGGGAGCCACCGGCGCCGACGGCATATTCTACCCCAACCCCTCCGACGACGACCCACCGGAAGCCCCTGAGGATTCCGCCCACGGCTTCTCCAAATTCCAGCAAATCCACATCCAAGCTGACCGCGCCCGCCAAATCCAGGAGGAAGATTTCAAGAAGAATCAGTCCACCTTCCTCGCCGCCATCGCCGACGTCGAAGACGCCCCTGACATCCCTTCCACTCTCGACTCCGGTGCCGACGACTTGTTCGGCGAGATCGATAAGGCTATTGCGCTTAAACGCAAGGAGTTCGTCAAGCAGGGCCTTCTCCAGCCCAATCCCGCCAAACCACTTATCCCCGACGTCGCCGATGAGCTTCAGCCTGACGAGCTCGCCGACGTGGAGGAAATTGACCAGCTCCGTGACCTTGCGGCAGCGGCAACCTCCGACGAGCCGCCGGGAGATTTCGTCGGCGAAGGAGATGATTCATCTCTGAAAGCTGATTCTCCGTTTGAGTTGGATTTTGAGAGTTATGGGAAGAGTAAGGCTAGGATTGTGGAACCGAAGTTTAGGATGAGTTTGGCTGAGCTTTTGGATGAGAGCAAAGTGGTGCCAGTGTCTGTGTATGGAAATTTGGAGGTTGAGATAACTGGGATTCAGCATGATTCTAGGCTTGTCACTTCTGGTAACTTGTTTGTGTGCTGTGTGAAAAACGATGGGCACGTGTTATTGAGTGAGGCGGATAAGCGAGGTGCTGTTGCTGTTGTTGCGAGTAAAGAGATTGATATTGAAGACACTTTGGGTTGTAAGGCTTTGGTGATTGTGGAAGATACCAATGCGGTTCTTGCTGCGTTGGCTGCGTCGTTTTATCGGTATCCTTCGAAGAACATGGCTGTTATTGGGATAGCTGGGACTTATGGCAAAACAACCACCACCTATTTGATAAAAAGCATGTATGAAGCAATGGGGCTGCGGACGGGGATGTTCAATTCAATCGCTTGTTATGTCCATGGGGATAATCAGTTGGATTTGGAAGCGGTTGATGAGACCCTGGATGCTGTTTTGGTTCAGAATTTGATGGCGAAGATGCTTCACAATGGAACTGAAGCGGTGGTCGCGGAGGCCTCTTCTCATGGACTGGCTGAGGGAAAGTATGACGAGGTTGATTTTGATATTGCGGTTTTTACGAATATGGCTGAGGAGGCAGATAGAGATGAGAATGCTAAGCTGTTCTCGAGGATGGTGGATCCTGACCGGCACAGGAAAGTTGTTAACATTGATGATCCGAATGCGCCTTCCTTCGTTTCATTGGGGAGCCCGGATGTTCCTGTTGTGACATTCGCGTTGGAGAATAAGGATGCAGATGTTCATCCCTTGAAGTTTGAACTCTCCCTGTTTGAGACTCAGGTGTTGGTTAACACACCCACCGGGATCCTGGAAATTTCATCGGGTTTGCTTGGAAGACACAATGTGTACAACATTCTTGCTGCTGTGGCAGTTGGCATTGCCGTCGGGGCACCCTTAGAGGACATTGTTAGAGGGATTGAAGAGGTTGATGCAGTTCCTGGTAGGTGTGAGTTGATTGATGAGGAACAAGCATATGGGGTAATTGTGGACTATGCTCGAACTCCTGATGCCTTGTCTAGATTGCTTGATTCTGTAAGAGAGCTTGGACCTCGCAGGATTATAACTGTTATCGGTTGCTGTGGCGAGGATGATAGGGGGAAGAGACCCTTGATGACCAAGATAGCAACAGACAAAAGTGAAGTGACCATGCTGACATCTGACAATTCCAAGAGTGAAGATCCATTGGATATTTTGGATGATATGTTGGCTGGGGTAGGATGGACAATGCAGGAGTACCTGAAATATGGAGAGAATGACTACTACCCTCCTCTTCCTAATGGTCATAGGCTTTTTCTCCATGACATTAGGAGGGTAGCTGTGCGAGCTGCTGTTGCAATGGGAGAGGAAGGTGATGTTGTTGTGATCGCTGGCAAAGGCCATGAAACATATGAAATAGCAGGTGAGAAGAGGGATTTCTTTGATGACAGAGAAGAGTGCAGGGAGGCATTGCAATATGTTGATGAGCTTCACCAAGCTGGAATAGATACAAGTGAATTTCCATGGCGGTTACCGGAGAGCCACTGA 2244 0.496 MALPFLTLPSFFHTSNSITATFAPPSTRFRSHSYRLRPPGATGADGIFYPNPSDDDPPEAPEDSAHGFSKFQQIHIQADRARQIQEEDFKKNQSTFLAAIADVEDAPDIPSTLDSGADDLFGEIDKAIALKRKEFVKQGLLQPNPAKPLIPDVADELQPDELADVEEIDQLRDLAAAATSDEPPGDFVGEGDDSSLKADSPFELDFESYGKSKARIVEPKFRMSLAELLDESKVVPVSVYGNLEVEITGIQHDSRLVTSGNLFVCCVKNDGHVLLSEADKRGAVAVVASKEIDIEDTLGCKALVIVEDTNAVLAALAASFYRYPSKNMAVIGIAGTYGKTTTTYLIKSMYEAMGLRTGMFNSIACYVHGDNQLDLEAVDETLDAVLVQNLMAKMLHNGTEAVVAEASSHGLAEGKYDEVDFDIAVFTNMAEEADRDENAKLFSRMVDPDRHRKVVNIDDPNAPSFVSLGSPDVPVVTFALENKDADVHPLKFELSLFETQVLVNTPTGILEISSGLLGRHNVYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAYGVIVDYARTPDALSRLLDSVRELGPRRIITVIGCCGEDDRGKRPLMTKIATDKSEVTMLTSDNSKSEDPLDILDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRAAVAMGEEGDVVVIAGKGHETYEIAGEKRDFFDDREECREALQYVDELHQAGIDTSEFPWRLPESH* 748
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0414 747 Pfam Mur ligase middle domain 333 531 IPR013221 GO:0005524|GO:0009058|GO:0016881
Lja4g0414 747 PANTHER MUR LIGASE FAMILY MEMBER 202 737 - -
Lja4g0414 747 MobiDBLite consensus disorder prediction 41 65 - -
Lja4g0414 747 SUPERFAMILY MurD-like peptide ligases, peptide-binding domain 552 724 IPR036615 GO:0009058|GO:0016881
Lja4g0414 747 Pfam Mur ligase family, glutamate ligase domain 552 635 IPR004101 GO:0009058|GO:0016881
Lja4g0414 747 SUPERFAMILY MurE/MurF N-terminal domain 224 324 IPR035911 -
Lja4g0414 747 SUPERFAMILY MurD-like peptide ligases, catalytic domain 303 563 IPR036565 GO:0005524|GO:0009058
Lja4g0414 747 Gene3D - 224 322 - -
Lja4g0414 747 Gene3D - 557 734 IPR036615 GO:0009058|GO:0016881
Lja4g0414 747 Hamap UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [murE]. 223 723 IPR005761 GO:0005524|GO:0005737|GO:0008360|GO:0016881|GO:0051301
Lja4g0414 747 TIGRFAM murE: UDP-N-acetylmuramyl-tripeptide synthetase 245 724 IPR005761 GO:0005524|GO:0005737|GO:0008360|GO:0016881|GO:0051301
Lja4g0414 747 PANTHER UDP-N-ACETYLMURAMOYL-L-ALANYL-D-GLUTAMATE--2,6-DIAMINOPIMELATE LIGASE MURE HOMOLOG, CHLOROPLASTIC 202 737 - -
Lja4g0414 747 Gene3D - 324 555 IPR036565 GO:0005524|GO:0009058
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0414 - - mtr:MTR_8g098345 1164.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0414 4 3338285 3343520 Lja4g0414 4 3338285 3343520 ECH