Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0412 ATGTGGATTTTTGGTTGGAAGGGGCCATCGGGATTCTCAGCCTCTTCCACAGCAGATCAAGTCACTCAAGGGATCGATGGAACTGGTCTCACTGCCATCATCACAGGAGCATCAAGTGGTCTTGGTTTGGAAACCACCCGGATTCTCGCATTGCGCGGTGTCCATGTTGTTATGGCAGTGAGGAATGTGAGCACTGGTATGGATGTTAAAGAAACAATGCTTAAGGAGATTCCCGCCGCGAAAATTGATGTTATGGAGTTAGATCTTAGTTCTATGGCGTCGGTGAGGAAATTTGCCGCAGATTTTAATTCATCTGGTCTTCCTCTCAATATTCTTATTAACAATGCAGGGGTGATGGCAACTCCATTCATGCTTTCCCAAGACAACATTGAATTGCAGTTTGCAACCAATCATTTAGGTCATTTTCTCTTGACAAACCTTCTGTTAGAAACTATGAAAAAAACTGTACGGGAATGCAACCGGGAGGGAAGGATAGTTATTCTATCATCAGAGGCACACAGATTTCCATATCAAGGAGGGATTTGTTTTGATAAGATCAATGATGAATCAGGATACAGCAGTTATTTTGCTTATGGACAATCAAAGCTTGCTAATATTTTGCATGCAAATGAGCTTGCAAGGCGTTTGAAGGAAGAAGGAGTGGATATAACAGTCAATTCCCTTCATCCGGGGTCAATTATTACAAACATTTTGCGACACCATGGTTATGTTAATGCCGTTGCTAATATGGTGGGCAAGTACTTCCTTAAAAATGTGCAACAGGGAGCTGCAACTCAATGTTATGTGGCCTTGCATCCACAAGTCAAGGGAATATCTGGTGAATACTTCATGGATAGCAATACGGCAAGCCCTACCAATCTGGCTAAAGATTCCGAGCTAGCAAAAAAGCTATGGGAATTCAGCTTAAGCTTGACTAATCCAAAGTAG 948 0.4241 MWIFGWKGPSGFSASSTADQVTQGIDGTGLTAIITGASSGLGLETTRILALRGVHVVMAVRNVSTGMDVKETMLKEIPAAKIDVMELDLSSMASVRKFAADFNSSGLPLNILINNAGVMATPFMLSQDNIELQFATNHLGHFLLTNLLLETMKKTVRECNREGRIVILSSEAHRFPYQGGICFDKINDESGYSSYFAYGQSKLANILHANELARRLKEEGVDITVNSLHPGSIITNILRHHGYVNAVANMVGKYFLKNVQQGAATQCYVALHPQVKGISGEYFMDSNTASPTNLAKDSELAKKLWEFSLSLTNPK* 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0412 315 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 29 289 IPR036291 -
Lja4g0412 315 PANTHER RETINOL DEHYDROGENASE 2 312 - -
Lja4g0412 315 Gene3D - 22 315 - -
Lja4g0412 315 PANTHER NAD(P)-BINDING ROSSMANN-FOLD PROTEIN 2 312 - -
Lja4g0412 315 Pfam short chain dehydrogenase 31 181 IPR002347 -
Lja4g0412 315 CDD retinol-DH_like_SDR_c_like 29 305 - -
Lja4g0412 315 PRINTS Glucose/ribitol dehydrogenase family signature 31 48 IPR002347 -
Lja4g0412 315 PRINTS Glucose/ribitol dehydrogenase family signature 107 118 IPR002347 -
Lja4g0412 315 PRINTS Glucose/ribitol dehydrogenase family signature 157 173 IPR002347 -
Lja4g0412 315 PRINTS Glucose/ribitol dehydrogenase family signature 198 217 IPR002347 -
Lja4g0412 315 PRINTS Glucose/ribitol dehydrogenase family signature 221 238 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0412 Lja-Chr4 3327083 3330728 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0412 33 291 Acyl Lipid Metabolism Gene Families AT1G63380 26.909 1.22e-10 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0412 - K19329 gmx:100785176 545.043
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0412 4 3327083 3330728 Lja4g0412 4 3327083 3330728 ECH