Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0409 ATGCCACCATTTGCAGGCTCTCACCCATTCCAACCAAAACCAGACACCAACATAGTCACAATTGATGTTGGTGGTCAAGTCTTCCAAACCACAAAACAAACACTAACCTCAGCAGGTCCCAAATCCTTCTTCTCCAGAATAGCTGAAGCTTCACCATTCTGCACCCCCTTTGTTGACAGAGACCCTGAAATCTTCTCCCTCCTTCTCTCCCTTCTCAGAACAGGTAACCTCCCTTCCAAGGCCAAATCCTTCGATCTCCAAGACCTTATCATCGAATCCCAATTCTACGGAATCGAAAATCTCCTCATCAATTCCCTCTCTTCCCCATCTCAATTCGAACCCTTCAACCTCCACAAATCGGTTCTGTTACCCCTTAACGGAAGAGACTCCCCCTCCGCCGTCGCCACCACCCCTTATGGATCCATCCACGTCGCACACGGCAGCAAGATTACATCGTTTGACTGGTCGCTCCGGCGAAAATCCACCATCCTCACCCACTTCACCGCCGTGGATTCCCTCCTCGCTATCTCCCCCTCCCTCGCCGCCGCCGGTGCCAACGACTTCTCCGGCCTCCAGATCCTCGACCTCGAGAACGGCCATGTCAGGGAAACCCTAAACTGGGAGAATGTCACCAAATCTGGATCCACCGTCCAAGCCATCGGGTCCTCCCCGGAGCAAATGTTCGTCAGCTTCGAGTCCGGCCGTAGAAACTCCAACTCCATCGTCGTCTATGACCTCCACACGTTAACCCCCGCCACCGAGATCTCCCACAACGAGATATTCGGCGCCGACATCGATTCCGCTATCCCGGCGACGAAGCTTCAATGGGTCTCAGAGCATAACCTTCTAATGGCAGCCGGGTCTCACAGCGGGCCTTCTGGTGTCTCCGGCAATGTCAGATTGTGGGATGTTCGCTCCGGGAATGTTGTCTGGGAGATGGCGGAGAAGGTGGATTGTTTCGCCGACGTGACAGTTTCAGATTCTTTGTCAGCGATTTTCAAGGTGGGTGTGAATTCAGGGGAAGCTTTCTACTTCGATTTGAGGAACCTGAGTGCTGAGAATTCATGGGTGTGTCTTGGTGATAAGAGAAAAGTGATGAATGGGAAGAAGGAAGGGTTTGGTTGCAAAATTGAAACACAAGGGAATCAAGTGTTTTGCAGCAAGGGTGGTGATGTGGAGCTTTGGTCAGAGGTTTTGATGGGAAACAAGGGAGGGAGATTGGAGGAGAGGATCTTCAAGAAGAATTTGATGGGGAGGGTGAAGGACATGGGAGGTGCTAAGATTACCAATGTTGCATTTGGAGGGAGTAGGATGTTCTTGACAAGGAAGGATCAGCAATGTGTTGAGGTTTGGCAGAGTTCTTCTAGGGAACTTTGA 1377 0.5134 MPPFAGSHPFQPKPDTNIVTIDVGGQVFQTTKQTLTSAGPKSFFSRIAEASPFCTPFVDRDPEIFSLLLSLLRTGNLPSKAKSFDLQDLIIESQFYGIENLLINSLSSPSQFEPFNLHKSVLLPLNGRDSPSAVATTPYGSIHVAHGSKITSFDWSLRRKSTILTHFTAVDSLLAISPSLAAAGANDFSGLQILDLENGHVRETLNWENVTKSGSTVQAIGSSPEQMFVSFESGRRNSNSIVVYDLHTLTPATEISHNEIFGADIDSAIPATKLQWVSEHNLLMAAGSHSGPSGVSGNVRLWDVRSGNVVWEMAEKVDCFADVTVSDSLSAIFKVGVNSGEAFYFDLRNLSAENSWVCLGDKRKVMNGKKEGFGCKIETQGNQVFCSKGGDVELWSEVLMGNKGGRLEERIFKKNLMGRVKDMGGAKITNVAFGGSRMFLTRKDQQCVEVWQSSSREL* 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0409 458 Pfam BTB/POZ domain 19 105 IPR003131 GO:0051260
Lja4g0409 458 SUPERFAMILY POZ domain 17 105 IPR011333 -
Lja4g0409 458 Gene3D - 134 458 IPR015943 GO:0005515
Lja4g0409 458 PANTHER BTB/POZ DOMAIN-CONTAINING ADAPTER FOR CUL3-MEDIATED RHOA DEGRADATION PROTEIN FAMILY MEMBER 14 456 IPR045068 -
Lja4g0409 458 CDD BTB_POZ_KCTD-like 19 96 - -
Lja4g0409 458 Gene3D Potassium Channel Kv1.1; Chain A 10 113 IPR011333 -
Lja4g0409 458 PANTHER PROTEIN BINDING PROTEIN 14 456 - -
Lja4g0409 458 SUPERFAMILY WD40 repeat-like 122 349 IPR036322 GO:0005515
Lja4g0409 458 SMART BTB_4 17 113 IPR000210 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0409 Lja-Chr4 3304482 3306400 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0409 - - gmx:100797171 763.066
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0409 4 3304482 3306400 Lja4g0409 4 3304482 3306400 ECH