Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0403 ATGGGACACGGTGAAAAGGGACGACCCTTCAAAAAGCACAAAGGCTCATCCAAATTCGAAGATCCCCGGAAAGGATTCGCCGAAGATGACGATGTATATGGCGGCGATGATGCCCACGATGATGACGAAGGAAAAACCAAAGATTTTAGCAAATTAGAGTTGAAACCAGATCACCAGAATCGCCCTCTCTGGGCTTGTGGCAATGGCCGCATATTCCTTGAGACCTTCTCTCCTTTGTACAAACAAGCTTATGATTTTCTCATCGCCATCGCCGAGCCCGTTTGCAGGCCGGAGTCAATGCATGAGTACAATCTTACTCCGCACTCGCTGTATGCTGCCGTTTCGGTTGGTCTAGAAACAGAAACAATCATAGCTGTTTTGAACAAGTTATCCAAGACCAAGCTTCCTAAAGATATGATTAAATTTATACATGATTCCACTGCAAATTATGGCAAAGTGAAGCTTGTTCTTAAGAAGAATCGCTACCTTGTTGAATCTCCATTTCCAGAAGTGTTGAAGACACTGCTCAGGGATGGAGTTATATCTCGAGCAAGGATTACTTCTGAGGGTGCAAATGGAGATGGATTTACAATCAGCAAAGCAGCAGGTGAAATTGAAGGCACCCATGATGAGTTGATAAATGAAGCAGAAGTGGCAGCAGTTGCAGAAGAGAAAGAAGCTCATTCGTTTGAAATTGATCCTGCTCAGGTTGAAAATGTAAAACAGCGTTGCCTGCCAAATGCATTAAATTTTCCCATGTTGGAGGAGTATGACTTCAGAAATGATACAGTGAACCCAGACCTTGACATGGAACTAAAGCCTCAGGCACAACCTCGACCATATCAAGAGAAGAGCCTTAGTAAAATGTTTGGAAATGGTAGAGCAAGATCTGGTATCATAGTTCTACCCTGTGGTGCTGGAAAGTCCCTTGTTGGTGTTTCTGCTGCTTGCCGGATAAAAAAGAGCTGCCTTTGTTTGGCAACAAATGCTGTCTCTGTAGATCAGTGGGCTTTCCAGTTTAAACTATGGTCAACTATTCGAGAAGAACAAATATGTCGTTTCACATCTGATAGCAAAGAGAGATTCCGTGGTAATGCTGGAGTTGTTGTGACAACCTATAATATGGTTGCTTTTGGTGGTAAACGGTCTGAAGAATCTGAAAAGATTATTGAGGAAATAAGAAACAGAGAATGGGGATTGCTTCTCATGGACGAGGTGCATGTGGTTCCAGCCCATATGTTTCGGAAAGTTATTAGCATCACTAAGTCTCATTGCAAACTTGGGCTCACAGCTACACTTGTGAGAGAGGATGAACGGATTACAGATCTGAATTTCCTAATTGGTCCCAAGCTGTACGAGGCAAATTGGTTAGATCTTGTAAAAGGTGGGTTTATTGCAAATGTACAGTGTGCTGAAGTATGGTGCCCAATGACAAAGGAGTTTTTTGCTGAGTATTTGAAGAAAGAGAACTCCAAGAAGAGGCAGGCCCTTTATGTGATGAATCCAAATAAATTCAGAGCATGTGAATTCCTCATTAACTATCATGAAAGGGCACGTGGTGATAAAATTATAGTCTTTGCTGATAATCTTTTTGCTCTCACTGAGTATGCTATGAAACTCCGCAAACCAATGATATATGGTGCTACAAGCCATGTTGAGAGGACAAAAATTCTACATGCATTCAAAACTAGCAAGGAAGTAAATACTGTTTTTCTTTCCAAGGTTGGTGACAACTCAATCGATATTCCTGAAGCAAATGTGATAATTCAGATCTCTTCACATGCTGGTTCAAGGCGTCAAGAAGCTCAACGTTTGGGTCGTATTCTTAGGGCAAAGGGAAAGATTGAGGATAGGATGGCAGGGGGTAAGGAGGAGTATAATGCATTCTTTTATTCCCTCGTGTCAACTGATACCCAGGAGATGTATTACTCAACTAAGAGGCAGCAATTTCTAATTGATCAGGGTTACAGTTTTAAGGTAATTACAAGCTTGCCTCCATCCGATGAAGGATCTCGTTTGAGCTATCATCATCTTGAGGATCAGTTGGCTCTTCTTGGAAAGGTATTGAGTGCTGGTGATGATGCGGTTGGGTTAGAACAACTAGAAGAAGACACAGATGAAATAGCTCTTAACAGTGCCCGTCGTTCTCATGGATCCATGAGTGCCATGTCAGGTGCAAAGGGGATGGTTTATATGGAGTACAGTACTGGGCGTAAAGGCCAAGGACAGATTAAGAGCAAGCCGAAAGATCCAGCAAAGAGACACTTCTTATTTAAAAGACGATTTGGCGCAAGCTAA 2298 0.4234 MGHGEKGRPFKKHKGSSKFEDPRKGFAEDDDVYGGDDAHDDDEGKTKDFSKLELKPDHQNRPLWACGNGRIFLETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYAAVSVGLETETIIAVLNKLSKTKLPKDMIKFIHDSTANYGKVKLVLKKNRYLVESPFPEVLKTLLRDGVISRARITSEGANGDGFTISKAAGEIEGTHDELINEAEVAAVAEEKEAHSFEIDPAQVENVKQRCLPNALNFPMLEEYDFRNDTVNPDLDMELKPQAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIREEQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISITKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFAEYLKKENSKKRQALYVMNPNKFRACEFLINYHERARGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILHAFKTSKEVNTVFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKIEDRMAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQGYSFKVITSLPPSDEGSRLSYHHLEDQLALLGKVLSAGDDAVGLEQLEEDTDEIALNSARRSHGSMSAMSGAKGMVYMEYSTGRKGQGQIKSKPKDPAKRHFLFKRRFGAS* 766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0403 765 MobiDBLite consensus disorder prediction 1 52 - -
Lja4g0403 765 Pfam Helicase conserved C-terminal domain 63 186 IPR032830 -
Lja4g0403 765 PANTHER DNA REPAIR HELICASE XPB1-LIKE 4 762 - -
Lja4g0403 765 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 387 709 IPR027417 -
Lja4g0403 765 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 506 672 IPR001650 -
Lja4g0403 765 Pfam ERCC3/RAD25/XPB C-terminal helicase 459 707 IPR032438 -
Lja4g0403 765 SMART helicmild6 534 612 IPR001650 -
Lja4g0403 765 PRINTS Xeroderma pigmentosum group B protein signature 147 166 - -
Lja4g0403 765 PRINTS Xeroderma pigmentosum group B protein signature 715 734 - -
Lja4g0403 765 PRINTS Xeroderma pigmentosum group B protein signature 463 485 - -
Lja4g0403 765 PRINTS Xeroderma pigmentosum group B protein signature 501 516 - -
Lja4g0403 765 PRINTS Xeroderma pigmentosum group B protein signature 61 81 - -
Lja4g0403 765 PRINTS Xeroderma pigmentosum group B protein signature 290 312 - -
Lja4g0403 765 PRINTS Xeroderma pigmentosum group B protein signature 397 417 - -
Lja4g0403 765 PRINTS Xeroderma pigmentosum group B protein signature 587 612 - -
Lja4g0403 765 PRINTS Xeroderma pigmentosum group B protein signature 259 285 - -
Lja4g0403 765 PRINTS Xeroderma pigmentosum group B protein signature 568 586 - -
Lja4g0403 765 PRINTS Xeroderma pigmentosum group B protein signature 521 543 - -
Lja4g0403 765 PRINTS Xeroderma pigmentosum group B protein signature 624 647 - -
Lja4g0403 765 Pfam Type III restriction enzyme, res subunit 277 433 IPR006935 GO:0003677|GO:0005524|GO:0016787
Lja4g0403 765 Gene3D - 268 459 IPR027417 -
Lja4g0403 765 CDD DEXHc_XPB 270 439 - -
Lja4g0403 765 MobiDBLite consensus disorder prediction 14 52 - -
Lja4g0403 765 PANTHER RAD25/XP-B DNA REPAIR HELICASE 4 762 - -
Lja4g0403 765 Gene3D - 460 700 IPR027417 -
Lja4g0403 765 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 289 451 IPR014001 -
Lja4g0403 765 SMART ultradead3 274 455 IPR014001 -
Lja4g0403 765 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 240 453 IPR027417 -
Lja4g0403 765 TIGRFAM rad25: DNA repair helicase rad25 48 760 IPR001161 GO:0003678|GO:0006289|GO:0006367
Lja4g0403 765 CDD SF2_C_XPB 470 634 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0403 K10843 - gmx:100789550 1397.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0403 4 3230180 3236744 Lja4g0403 4 3230180 3236744 ECH