Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0395 ATGGATGTTCTATTACTATTAGTATTTATGATGGTTGTTCTGCCAAGCCTGCATGTGGTGGAGAGTGTAAGAACTCCAGTTCTGGAAAATTTCGAGTACTGTGCTGTGAACTGCAGAGCTTACAGTGCCTCAGTGACAGATTTTGGAGGGGTTGGTGATGGAACAACTTTGAACACACAAGCCTTTCGGAAAGCCATAGAACATTTGAGCCAGTACTCATCTAATGGAGGGTCTCAGCTTTATGTTCCTCCAGGAAGATGGTTGACTGGAAGCTTCAATCTCACCAGCCACTTCACTTTATTCATTCACAAGGATGCTGTGATTCTTGGCTCTCAGGATGAAAATGAGTGGCCAGTGATTGATCCTCTTCCATCTTATGGTAGAGGGAGGGATACCCAAGGTGGAAGGTTTAGCAGTCTTATTTTTGGAACCCACCTCACAGATGTGATCATAACTGGGGACAATGGCACATTAGATGGACAAGGTGATCTGTGGTGGAAAAAATTCCACAATAAGCAGCTACAATATACCCGGCCTTACCTGATTGAAATTATGTATTCAGATAATGTTCAGATATCCAATCTCACTTTGGTTAATTCTCCATCATGGAATATCCATCCTGTTTATTGCAGCAACGTTATTGTTCAAGGCATCACAATTCTTGCTCCTGTGACATCCCCAAATACAGACGGCATCAACCCTGACTCTTGCACAAACACACGGATTGAAGACTGTTATATTGTGTCTGGGGATGACTGTGTGGCTGTGAAGAGTGGTTGGGATGAGTATGGTATATCTTATGGAATGCCAACAAAGCACCTTGTAATCAGAAGACTCACTTGCATTTCTCCAACCAGTGCTGTGATTGCTTTAGGGAGTGAAATGTCTGGTGGGATTGAGGATGTAAGAGCTGAGGACATTCTAGCCATTAATTCAGAATCAGGGGTCAGGATCAAAACTGCTGTTGGAAGAGGAGGCTATGTCAGGGACATATATGTTAGAAGGATGACTATGAAAACCATGAAATGGGTATTTTGGATGACAGGGGATTATGGATCTCATGCTGACAACAACTATGATCCTAACGCAATTCCTGTGATTGAGAACATTAACTACCGTGACATGGTTGCTGAGAATGTGACCATGGCAGCAAGGTTGGAGGGTATATCCGGTGCCCCTTTTACTGGAATTTGCATATCCAATGTAACCATTGAACTGGCCAAGAAGGCTAAAAAAGTGCCTTGGACTTGCACTGATGTTTCCGGGATTTCCAGTGGAGTGACTCCTGAGCCATGTGAACTCTTGCCAGGGCAGGCAGAAGAGAAGTTTGGAGCATGTTCCTTCCCAGAAGACAATTTGGCCATTGAAGATGTCAAGGTTCAGACGTGTACTTACAGAAGGAATTTATGA 1410 0.4362 MDVLLLLVFMMVVLPSLHVVESVRTPVLENFEYCAVNCRAYSASVTDFGGVGDGTTLNTQAFRKAIEHLSQYSSNGGSQLYVPPGRWLTGSFNLTSHFTLFIHKDAVILGSQDENEWPVIDPLPSYGRGRDTQGGRFSSLIFGTHLTDVIITGDNGTLDGQGDLWWKKFHNKQLQYTRPYLIEIMYSDNVQISNLTLVNSPSWNIHPVYCSNVIVQGITILAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGISYGMPTKHLVIRRLTCISPTSAVIALGSEMSGGIEDVRAEDILAINSESGVRIKTAVGRGGYVRDIYVRRMTMKTMKWVFWMTGDYGSHADNNYDPNAIPVIENINYRDMVAENVTMAARLEGISGAPFTGICISNVTIELAKKAKKVPWTCTDVSGISSGVTPEPCELLPGQAEEKFGACSFPEDNLAIEDVKVQTCTYRRNL* 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0395 469 SUPERFAMILY Pectin lyase-like 36 436 IPR011050 -
Lja4g0395 469 Gene3D - 26 424 IPR012334 -
Lja4g0395 469 PANTHER PECTIN LYASE-RELATED 5 466 - -
Lja4g0395 469 Pfam Glycosyl hydrolases family 28 135 419 IPR000743 GO:0004650|GO:0005975
Lja4g0395 469 Pfam Pectate lyase superfamily protein 44 100 IPR024535 -
Lja4g0395 469 PANTHER PECTIN LYASE-LIKE SUPERFAMILY PROTEIN 5 466 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0395 Lja-Chr4 3151286 3154450 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0395 1 466 Glycoside Hydrolase AT3G61490 67.722 0.0 703
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0395 - - gmx:100785841 842.802
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0395 4 3151286 3154450 Lja4g0395 4 3151286 3154450 ECH