Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0390 ATGCCTTCTTCTTCTTCTTCTTCAGTTCGCAGATTCACAATGGCAGCGATATCCAACTCCTTATCACTCAAGCACACCCTCTCTCTCGGGTTTCCCCAAACAACCTCTCTCAGCCGAGCTCGTCCTTCTTCTTCTTCCACTTCCGTCGCTTTCAGACACTTCCGGCGATGTTACGCTTCTTTCGCCAACGAGAATCGCGAGTATGTGATTGTCGGTGGTGGAAACTCCGCCGGTTATGCAGCTCGCACTTTCGTCGAGCACGGCTTGGCTGATGGCCGCCTCTGTATCGTCACCAAAGAGGCATATGCACCTTACGAGCGTCCCGCTCTCACAAAAGCCTATTTGTTCCCGCCGGAAAAGAAACCCGCGCGTCTTCCTGGATTTCACACTTGTGTTGGATCCGGTGGAGAAAGGCAGACTCCGGAGTGGTATAAACAGAATGGGGTAGAGATGTTGTATGAAGATCCAGTAGAAAATATTGATATTGAAAAGCAAACTTTGGCAACAAATTCTGGGAAAATTCTCAAGTATGGGTCGCTTATTATTGCTACAGGATGTACAGCCTCAAGGTTTCCGGAGAAAATTGGAGGAAATCTACAGGGTGTTCACTATATCCGGGATGTTGCAGATGCTGACGTGTTGGTTTCATCGTTGAAAAATGCAAAAAAGGTTGTAGTTGTGGGAGGTGGTTATATAGGAATGGAGATTGCTGCTGCAGCTGTTGGTTGGAATCTTGACACAACAATCATATTTCCAGAAGATCACCTGTTACAAAGATTGTTCACTCCTTCTCTTGCCCGGAGATATGAAGAACTCTACCAAAAGAATGGAGTCAAAATCTTGAAGGGTGCCTCCATAAAAAATTTGGAAGCTGGTTCTGATGGACATGTAGCTTCTGTGAAACTCGGAGATGGATCTATTGTAGAAGCAGATACGGTAATTATAGGCATTGGAGCAAAGCCTGCTGTTAGTCCCTTTGAGAAGGTGGGCCTGAATACAGATGTTGGTGGTATTCAGGTTGACGGTCAATTCCGAACGAGCATCCCAGGAATTTTTGCTATTGGTGACGTTGCAGCTTTCCCTTTAAAGATCTATAACCGTACTGCTCGAGTGGAACATGTAGATCATGCTCGTCGATCAGCACAGCACTGTGTGAAAGCATTACTCAGTGCTCAAACTGACACGTATGACTATCTTCCATACTTCTACTCAAGGGTTTTTGAATATGAAGGGAGCCAGAGAAAAGTATGGTGGCAGTTCTTTGGAGATAATGTTGGAGAAACAGTTGAAATTGGAAACTTTGATCCCAAAATAGCTACCTTTTGGATAGAATCTGGTAAGCTGAAAGGAGTTCTTCTTGAAAGTGGGAGTCCTGAGGAATTTCAGCTCCTGCCTAAACTTGCCAGAAGTCAGCCTCCGGTTGACAAAGCCAAACTTCAAAACGCAACCTCAGTGGAGGAGGCCCTAGACATTGCTCAATCGGGGATCCTTGCAAGTTGA 1500 0.4567 MPSSSSSSVRRFTMAAISNSLSLKHTLSLGFPQTTSLSRARPSSSSTSVAFRHFRRCYASFANENREYVIVGGGNSAGYAARTFVEHGLADGRLCIVTKEAYAPYERPALTKAYLFPPEKKPARLPGFHTCVGSGGERQTPEWYKQNGVEMLYEDPVENIDIEKQTLATNSGKILKYGSLIIATGCTASRFPEKIGGNLQGVHYIRDVADADVLVSSLKNAKKVVVVGGGYIGMEIAAAAVGWNLDTTIIFPEDHLLQRLFTPSLARRYEELYQKNGVKILKGASIKNLEAGSDGHVASVKLGDGSIVEADTVIIGIGAKPAVSPFEKVGLNTDVGGIQVDGQFRTSIPGIFAIGDVAAFPLKIYNRTARVEHVDHARRSAQHCVKALLSAQTDTYDYLPYFYSRVFEYEGSQRKVWWQFFGDNVGETVEIGNFDPKIATFWIESGKLKGVLLESGSPEEFQLLPKLARSQPPVDKAKLQNATSVEEALDIAQSGILAS* 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0390 499 PANTHER APOPTOSIS-INDUCING FACTOR 1 19 496 - -
Lja4g0390 499 Gene3D - 191 318 IPR036188 -
Lja4g0390 499 SUPERFAMILY FAD/NAD(P)-binding domain 63 388 IPR036188 -
Lja4g0390 499 PANTHER MONODEHYDROASCORBATE REDUCTASE, CHLOROPLASTIC/MITOCHONDRIAL 19 496 - -
Lja4g0390 499 PRINTS FAD-dependent pyridine nucleotide reductase signature 177 195 - -
Lja4g0390 499 PRINTS FAD-dependent pyridine nucleotide reductase signature 336 358 - -
Lja4g0390 499 PRINTS FAD-dependent pyridine nucleotide reductase signature 223 241 - -
Lja4g0390 499 PRINTS FAD-dependent pyridine nucleotide reductase signature 310 326 - -
Lja4g0390 499 PRINTS FAD-dependent pyridine nucleotide reductase signature 69 88 - -
Lja4g0390 499 PRINTS Pyridine nucleotide disulphide reductase class-I signature 223 248 - -
Lja4g0390 499 PRINTS Pyridine nucleotide disulphide reductase class-I signature 351 358 - -
Lja4g0390 499 PRINTS Pyridine nucleotide disulphide reductase class-I signature 311 325 - -
Lja4g0390 499 PRINTS Pyridine nucleotide disulphide reductase class-I signature 67 89 - -
Lja4g0390 499 Gene3D - 401 487 IPR016156 GO:0016491|GO:0050660
Lja4g0390 499 Gene3D - 69 384 IPR036188 -
Lja4g0390 499 Pfam Pyridine nucleotide-disulphide oxidoreductase 68 381 IPR023753 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0390 Lja-Chr4 3121146 3126400 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0390 222 362 Acyl Lipid Metabolism Gene Families AT1G48030 30.921 2.85e-13 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0390 K08232 - gmx:100819919 836.254
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0390 4 3121146 3126400 Lja4g0390 4 3121146 3126400 ECH