Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0388 ATGGGACTAATGAACAAACAACAAAAACCTCAATTGTTGTCTAAGATAGCCACCGGCAACGGACACGGTGAAGATTCCCCTTACTTTGATGGATGGAAGGCTTATGATGAAAACCCCTTTCACCCCACCAACAATCCCAATGGGGTTATCCAAATGGGTCTTGCAGAGAATCAGCTTACTTCCGACTTGGTTGAAGATTGGGTAATGAGCAACCCAGAAGCCTCCATTTGTACTCCAGAAGGAGTATATGATTTCAAGGCCATATCTAACTTCCAGGATTATCATGGTCTTCCAGAGTTCAGAAATGCTGTGGCTAAATTCATGGGAAAAACAAGAGGAAACAGAGTGACATTCGACCCTGATCGTATTGTCATGAGTGGTGGAGCAACCGGAGCACACGAAGTCACTGCTTTTTGTTTGGCAGATCCCGGTGATGCATTTTTGGTGCCCACCCCCTATTATCCAGGTTTCGATCGAGATTTGAGGTGGAGAACAGGAGTTCAGCTTCTTCCAGTTATCTGCGAAAGCTCCAACAATTTCAAGCTCACAAAGCAAGCCTTAGAAACCGCATTGAACAAAGCCAAACAAGACAACATCAGAGTCAAAGGCTTGCTCATCACCAACCCATCAAACCCACTAGGCACTGTCATGGACCGAACCACACTCAGAACCACATTAACCTTCATCAACGAGAACCGCATCCACCTCATCTGCGACGAAATCTACGCCGCCACAGTTTTCGGCCACCCCACTTTCACAAGCATTGCTGAGATTATAGAACAGGACACGGACATTGAATGTGACCGTGACCTCGTTCACATTGTTTACAGTCTTTCAAAGGACATGGGGTTCCCTGGTTTCAGAGTTGGAATTATATACTCATACAATGATGCTGTTGTTAACTGTGCTCGTAAGATGTCAAGTTTTGGATTGGTTTCAACTCAGACACAGTATCTTTTGGCAGCAATGCTTGCAGATGAGGCTTTTGTGGAAAGGTTTCTGGGAGAGAGTGCAAAGAGGTTGGGCCAAAGGTACAGAGTTTTCACTGGGGGGTTGTCTAAAGTTGGCATTAAGTGCTTGCAGAGCAGTGGGGGTCTGTTTGTTTGGATGGATTTGCGCCATCTTTTGAAGGAGAAGACGTTTGATTCGGAAATGGAGCTTTGGAGGATGATCATTCATGAAGTGAAGATCAATGTTTCACCTGGCTCTTCTTTTCATTGCTCTGAGCCAGGGTGGTTCAGGGTGTGCTATGCCAACATGGATGACAGGGCTGTGCAGGTTTCTTTGCAGAGGATTCGCGCGTTTGTTCTTCAGAACGTGGAGGTCAAGGTGCCTGAGAAGAGGCCTTGCTGGCAGAGTAACTTGAGGCTGAGCTTCAAGACTAGAAGGTTTGATGATATCATGATGTCACCTCACTCACCTATGCCACAGTCACCTCTAGTTAAAGCCACTACTTGA 1458 0.4609 MGLMNKQQKPQLLSKIATGNGHGEDSPYFDGWKAYDENPFHPTNNPNGVIQMGLAENQLTSDLVEDWVMSNPEASICTPEGVYDFKAISNFQDYHGLPEFRNAVAKFMGKTRGNRVTFDPDRIVMSGGATGAHEVTAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLLPVICESSNNFKLTKQALETALNKAKQDNIRVKGLLITNPSNPLGTVMDRTTLRTTLTFINENRIHLICDEIYAATVFGHPTFTSIAEIIEQDTDIECDRDLVHIVYSLSKDMGFPGFRVGIIYSYNDAVVNCARKMSSFGLVSTQTQYLLAAMLADEAFVERFLGESAKRLGQRYRVFTGGLSKVGIKCLQSSGGLFVWMDLRHLLKEKTFDSEMELWRMIIHEVKINVSPGSSFHCSEPGWFRVCYANMDDRAVQVSLQRIRAFVLQNVEVKVPEKRPCWQSNLRLSFKTRRFDDIMMSPHSPMPQSPLVKATT* 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0388 485 Gene3D - 72 326 IPR015421 GO:0003824
Lja4g0388 485 ProSitePatterns Aminotransferases class-I pyridoxal-phosphate attachment site. 277 290 IPR004838 GO:0003824|GO:0009058|GO:0030170
Lja4g0388 485 Gene3D Aspartate Aminotransferase, domain 1 38 431 IPR015422 GO:0003824
Lja4g0388 485 PANTHER 1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 6 4 447 - -
Lja4g0388 485 SUPERFAMILY PLP-dependent transferases 22 436 IPR015424 -
Lja4g0388 485 Coils Coil 177 197 - -
Lja4g0388 485 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 52 78 - -
Lja4g0388 485 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 144 165 - -
Lja4g0388 485 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 303 326 - -
Lja4g0388 485 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 198 222 - -
Lja4g0388 485 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 234 257 - -
Lja4g0388 485 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 122 142 - -
Lja4g0388 485 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 85 101 - -
Lja4g0388 485 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 271 295 - -
Lja4g0388 485 Pfam Aminotransferase class I and II 50 432 IPR004839 GO:0009058|GO:0030170
Lja4g0388 485 PANTHER BIFUNCTIONAL ASPARTATE AMINOTRANSFERASE AND GLUTAMATE/ASPARTATE-PREPHENATE AMINOTRANSFERASE-RELATED 4 447 - -
Lja4g0388 485 CDD AAT_like 90 434 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0388 Lja-Chr4 3109222 3112786 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0388 K20772 - gmx:100037458 846.269
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0388 4 3109222 3112786 Lja4g0388 4 3109222 3112786 ECH