Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0383 ATGAAGTGCAGATCCGTAGCGTGCATATGGTCACGCACACCATTCCCTTACCAACACCGTGTCACCGTCGTCGCCGCCTTCACCCAACCACCGTCTCCCACCTTTTACACCGCCGGATCCGATGGCTCCATCATCTGGTGGACCCTCTCCCTTTCCTCTCCCACCCCGCAAGTTAAAGCTGTGGGTGTGTTGTGTGGTCACGCTGCACCCATCACTGATCTTGGGCTATGCAGTCCCATAGATGCAGAAGAAACCGGTTGTGGAAGCAGTTTCACTGCGTTGATAAGTGCTTGTTCTGATGGGTTTTTGTGCGTGTGGAGTAGAAGCAGTGGGCATTGCCGTTGCCGGAGAAAGTTGCCGCCGTGGGTCGGCACTCCTCTGATAATTCGAACTCTGCCTTCAACACCAAGGTATGTGTGTATAGCTTGCTCTTTTGTGGATGGAAATGAAGATTTAGTGGATAGAGAAGCTCAGCATAGGAAGCCAACTAAATGTACTATCCTTGTTGTGGACACATATTCACTTTCCATTACTCAAACTGTGTTTCATGGGAATCTATCTATTGGTCCTATCAAGTTTATGGAAGTGGTGTTTGATGATGAGAAGAGGAATTCAGTGTTAGTGGCTGATTCAGCTGGGAATCAACAGATGGTTGCGATATCGGAGGACCCTCTTGATGGTGGGGAAAGCATGGCAAGTTCGCGCCGTGATAAATCTCAGTTAGAAAGTTCTTTTAGGTATGAGGGATTCAGTGGTGCGGATCAAATTGTTTCGGTTTTAACCTATGGGAATATTGTTGCTTATGTCTTGAATAATTGTTGCATTTTTAAGTCGTTGTCTAGTGATAGTACAATTGGAGAGGTTTCTTTTGCGGACAGTCTCTTGTGTTTAGGTGATGGGGATTCTACTCAATCACATGCTGTTGGTGGCATTTTTCTTGATGATATAGGGAATGTGGCCAATGCCCATGAGTTTGGTGACTTGATTCCAGTACATTTTGTTGTGTGGAATAGTAGAGGTTGTGCAATTATCTATAAAATATTGTATGAGAATGATGTTTTTCAATGTGAACCTCATGCTGAGATTCCTGCTACTCATGATCAGCCTGATATGAGGTCATCTATTTGTTTTCTACAAGTTAATCAACATCTTGTGTGCATCAAGTCAATTTGCTTTCATTATGAGGAACCTTTACTATGGAGACCACATGTCACAATCTGGTCACTGCTTCACTTTGATGATAATCCAGGTAAATTGTACCGTCAGTGCAGAATGATCAGTGATGGATCTTTCAACAACTGGTTTGAGAAATCAACTCAACTCAAGAGTCTGGATGATATTGAGACTACATCAACTTTTGCTGCAAGTCCGAGTTCTGATGACATAGACAATATACATGTGGATAGCATGACTAGTTATTATGCTTCCAAGGGGCAGATAGTTTCTTCTTCCATGATTATCTCTGAGAACCTCTTTACTCCTTATGCTGTTGTATTTGGATTTTTAAGTGGAGACATAGAAGCTGTGAGGTTTGATCCATTTCAAGGGATTTTCTTGGATGGTGCAGGTTCCAATCCTGATGAAAAGTCAGCTGCATACAAACAGCAATTCTTGGGACATAAAGGTGCTGTACTTTGTTTGGCAGCACATCAAATATTGGGCAGTACTAAAAGTTGTACTTTTAAACGGGTTTTGGTGTCTGGAAGTACAGATTGCACAGTTCGTATATGGAATCTTGACACTGGCAGTCTTATTACGGTAATGCATCATCATGTGGCTGCTGTGCGTCAAATTATTCTTCCCCCATCTTTGACTGGACATCCTTGGAATGACTGCTTTCTTTCAGTTGGAGAGGATGCATGTGTCACTCTTGTTTCTCTTGAGACTCAGCGGGTGGAGAGAATGTTTCCTGGACACATGAACTATCCTTCGAAAGTTTTATGGGATGGAGCAAGAGGTTATATTGCGTGCCTCTGTCAAACACATTATGGAACTTCTGATGGTGATGTATTATACATCTGGGATGTAAAGACAGGTTCCCGCGAGCGAGTTCTACGTGGGACAGCTGCACATTCAATGTTTGATCATTTTTGTAAAAGCATCAGCATGAATTCCATATCTGGCTCACTGCTGAATGGAAATACATCAGTCTCTTCATTACTTCTTCCAATCGTTGATGATGCAAGGCTCTCCAACTCCTCCTTAAGTCCGTCAGAGAAGTTGCTTACTTCATCAAGGTCATCACCAAGTATTTCAAACATGACTGAGCTTAGATCTTCCAAAGCAAATGCAGGTGTAGAAAATTCATCAAAGCCAAATTCGTCCTCCCTGTTTGGTCTCTTGAGTAACAAGCTTCCAATCAAATGCTCTTGCCCATTACCTGGTGTTGTGTCTCTGAGTTTTGATCTCGCATCATTGATGTTCTCTTTTAAAATGAATGAGTCCACACAGAATGGTGATGGCAAGCCGGTTAATATCAACTTGGAGCAACAGGGAATTCCGGAGCAAAACCCCAGCCACCATAATCCTGAAACTATAGAGGGGCGTGACTGGGTTAGCCTATTTGAAGAATACTTACTTCGATACAGCTTGTCATTTTTACATTTGTGGAGTGTAGATAGTGAGCTTGATAATTTGCTGATAAATGATATGAAACTGAGGAGACCAGAAAATTTTATAGTCGCTTCAGGTATTCAAGGAGATAAAGGATCACTGACATTGGCATTTCCTGATGCTACTCTTGAGCTCTGGAAATCTTCATCTGAGTTTTGTGCAATGAGATCATTGACGATGGTATCCCTTGCTCAACGTTTAATTAGCTTGTCTCACTCTGGTTCAGCAGCCAGCAGTGCTTTAGCAGCATTTTATACCCGGAATTTCATTGAAAATTTTCCAGATCTGAAGCCACCTTCATTGCAGCTCTTGGTGGCTTTTTGGCAAGATGAAAGTGAACATGTACGTATGGCCGCACGCTCTATATTTCATTGTGCTGCCTCTCATGCTATTCCACTACCTCTGCGAAATTCAAAACCTATTGAGTCTACTAATATGAGCTCCCAAGTGGGAAGTGATAACAAACACATGGGAGATATGACAGTACAAAGCATATCTCCTAAGGAAGAAAAGCAAGGGATTTCCCAAGATGAGGAATCCAAAATACTTGCTTGGCTTGAATCATTTGAAGTGCAAGATTGGATTTCTTGTGTTGGTGGAACAAGTCAAGATGCAATGACATCTCATATTGTTGTTGCTTCTGCATTGTCTATCTGGTACCCTAGTCTTGTAAAGCCAAGTCTTGCTACATTAGTTGTTCATCCATTAATGAAGTTGGCTATGGCAATGAGTGAGAAGTACAGCTCCACTGCTGCTGAGCTCCTTTCAGAGGGCATGGAGGGTACATGGAAGGAATGCATTGCCTCTGAGATTCCTCATCTGATTGGGGATATTTTTTTCCAAGTAGAGTTGAGTGGCCCATCATCCAAGTCAATGACAGAAGTTCCAGTGGCATCTTTTGCTATTAAGAAGACATTAGTGGAGGTTCTTCTTCCAAGTTTAGCTATGGCTGATATACCAGGTTTTTTGACTGTGATAGAAAGCCAAATTTGGTCAACTGCATCTGATTCACCTGTCCACTTGGTGTCCTTGTTGACTCTTATAAGGATCATGCGTGGTTCTCCAAGAAATTTGGCACAGTACCTTGACAAGGTTGTCAACTACATTTTACAGACTTTAGATCCTAGCAATTCAGTTATGCGGAAGGCGTGTTTTCAGAGTTCGATGACAACTCTCAAAGAAGTTGTACGTGTATATCCTATGGTTGCTGTCAATGAGTCATGGACAAGACTGGCAGTTGGAGATGTGATTGGAGAAGTTAGCAATGCAAGCATTAGGGTTTATGATATGCAAAGTGTCACGATGATAAAGGTTTTGGATGCAAGTGGGCCTCCTGGACTACCAAGTTTGCTAACAGCAGCAACATCAGGAACAGTGTTAGCTACTGCAATTTCAGCACTAAGCTTTTCGCCAGATGGAGAGGGGCTGGTTGCTTTTTCGGAACATGGGCTTATGATTAGATGGTGGTCACTGGGATCTATCTGGTGGGAGAAACTGAGCAGAAACTTTGTTCCTGTCCAGTGCACCAAACTAATCTTTGTTCCTCCTTGGGAGGGATTCTCACCTAATTCATCCAGGTCAAGCATAATGGCCAACATTTTAGAAACAGATAAGCAGTTGAACTTTGAGGATGATTCGAGGGATTCAAATCATGGCGACAGTTTGAAACAATTGCTTCATAATCTGGACCTTTCTTATCGATTAGAATGGGTTAGTGATCGGAAGGTATTTCTTACAAGGCATAGTCATGAATTGGGCACTTTTCAGTTATAA 4386 0.4241 MKCRSVACIWSRTPFPYQHRVTVVAAFTQPPSPTFYTAGSDGSIIWWTLSLSSPTPQVKAVGVLCGHAAPITDLGLCSPIDAEETGCGSSFTALISACSDGFLCVWSRSSGHCRCRRKLPPWVGTPLIIRTLPSTPRYVCIACSFVDGNEDLVDREAQHRKPTKCTILVVDTYSLSITQTVFHGNLSIGPIKFMEVVFDDEKRNSVLVADSAGNQQMVAISEDPLDGGESMASSRRDKSQLESSFRYEGFSGADQIVSVLTYGNIVAYVLNNCCIFKSLSSDSTIGEVSFADSLLCLGDGDSTQSHAVGGIFLDDIGNVANAHEFGDLIPVHFVVWNSRGCAIIYKILYENDVFQCEPHAEIPATHDQPDMRSSICFLQVNQHLVCIKSICFHYEEPLLWRPHVTIWSLLHFDDNPGKLYRQCRMISDGSFNNWFEKSTQLKSLDDIETTSTFAASPSSDDIDNIHVDSMTSYYASKGQIVSSSMIISENLFTPYAVVFGFLSGDIEAVRFDPFQGIFLDGAGSNPDEKSAAYKQQFLGHKGAVLCLAAHQILGSTKSCTFKRVLVSGSTDCTVRIWNLDTGSLITVMHHHVAAVRQIILPPSLTGHPWNDCFLSVGEDACVTLVSLETQRVERMFPGHMNYPSKVLWDGARGYIACLCQTHYGTSDGDVLYIWDVKTGSRERVLRGTAAHSMFDHFCKSISMNSISGSLLNGNTSVSSLLLPIVDDARLSNSSLSPSEKLLTSSRSSPSISNMTELRSSKANAGVENSSKPNSSSLFGLLSNKLPIKCSCPLPGVVSLSFDLASLMFSFKMNESTQNGDGKPVNINLEQQGIPEQNPSHHNPETIEGRDWVSLFEEYLLRYSLSFLHLWSVDSELDNLLINDMKLRRPENFIVASGIQGDKGSLTLAFPDATLELWKSSSEFCAMRSLTMVSLAQRLISLSHSGSAASSALAAFYTRNFIENFPDLKPPSLQLLVAFWQDESEHVRMAARSIFHCAASHAIPLPLRNSKPIESTNMSSQVGSDNKHMGDMTVQSISPKEEKQGISQDEESKILAWLESFEVQDWISCVGGTSQDAMTSHIVVASALSIWYPSLVKPSLATLVVHPLMKLAMAMSEKYSSTAAELLSEGMEGTWKECIASEIPHLIGDIFFQVELSGPSSKSMTEVPVASFAIKKTLVEVLLPSLAMADIPGFLTVIESQIWSTASDSPVHLVSLLTLIRIMRGSPRNLAQYLDKVVNYILQTLDPSNSVMRKACFQSSMTTLKEVVRVYPMVAVNESWTRLAVGDVIGEVSNASIRVYDMQSVTMIKVLDASGPPGLPSLLTAATSGTVLATAISALSFSPDGEGLVAFSEHGLMIRWWSLGSIWWEKLSRNFVPVQCTKLIFVPPWEGFSPNSSRSSIMANILETDKQLNFEDDSRDSNHGDSLKQLLHNLDLSYRLEWVSDRKVFLTRHSHELGTFQL* 1462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0383 1461 PANTHER RABCONNECTIN-3B, ISOFORM A 1 1461 - -
Lja4g0383 1461 PANTHER RABCONNECTIN-3B, ISOFORM A 1 1461 - -
Lja4g0383 1461 Gene3D - 4 164 IPR015943 GO:0005515
Lja4g0383 1461 MobiDBLite consensus disorder prediction 1012 1031 - -
Lja4g0383 1461 Gene3D - 504 784 IPR015943 GO:0005515
Lja4g0383 1461 SUPERFAMILY NHL repeat 1293 1363 - -
Lja4g0383 1461 SUPERFAMILY ARM repeat 933 1292 IPR016024 -
Lja4g0383 1461 SUPERFAMILY WD40 repeat-like 18 692 IPR036322 GO:0005515
Lja4g0383 1461 Pfam WD domain, G-beta repeat 537 578 IPR001680 GO:0005515
Lja4g0383 1461 MobiDBLite consensus disorder prediction 734 772 - -
Lja4g0383 1461 ProSiteProfiles Trp-Asp (WD) repeats profile. 565 587 IPR001680 GO:0005515
Lja4g0383 1461 SUPERFAMILY WD40 repeat-like 23 398 IPR036322 GO:0005515
Lja4g0383 1461 SMART WD40_4 581 626 IPR001680 GO:0005515
Lja4g0383 1461 SMART WD40_4 629 675 IPR001680 GO:0005515
Lja4g0383 1461 SMART WD40_4 5 48 IPR001680 GO:0005515
Lja4g0383 1461 SMART WD40_4 530 578 IPR001680 GO:0005515
Lja4g0383 1461 SMART WD40_4 57 107 IPR001680 GO:0005515
Lja4g0383 1461 SMART WD40_4 1327 1361 IPR001680 GO:0005515
Lja4g0383 1461 ProSitePatterns Trp-Asp (WD) repeats signature. 565 579 IPR019775 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0383 K24738 - gmx:100816646 2347.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0383 4 3077695 3085653 Lja4g0383 4 3077695 3085653 ECH