Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0379 ATGAATGGCAATTCCAAACACCAGCGCCGATGGGCGTCTGACTCCGTTCCCGGAAAATCAACCGTCAGCGCCGGGACTTCTCCGGGGAGTGACTCCACTTTCGCCGGCGACGAGTTTGTCGAGGTCACTCTTGATCTTCGAGACGACGACACAATCGTGCTTCGGAGTGTCGAGCCGGCGTCTGTTATCAACGTCATCGACGACGGCGGCGCGTCTAGCAGCGGATGTGAAACTCCGGCGGCAGTTTCTCGGTCGCCGACGATCCGGAGAACCTCGTCCAGAGGCTTGCGGCACTTCTCCCAAGAACTGAAGGCTGAGGCGGTTGCCAAGGCCAGGCAATTCTCGCAGGAGCTCAAAGCGGAGCTGCGGCGATTCTCATGGAGCCACGGCCACGGTTCGCGCGCTTCGTCTTCCTCTGCTCCGAACGGCACCGGAGGTGCCGGCGGCGCCGTTGAAACGGCGCTGGCTGCAAGAGCTCTACGGAAGCAGCGCGCTCAGCTTGATCGCACTCGCTGCGGTGCTCACAAAGCGCTCCGTGGTCTCAGATTCATCAGCAGTAAATCCAACGGCGTTGATCCGTGGATCGAAGTGCAGAGGAACTTCGATACGCTTAGCAGTGACGGTTATCTCTATCGCGACGAGTTCGGTCAATGCATAGGGATGAAAGATTCGAAGGAATTCGCACTGGAATTGTTTGATGCGCTGGGACGTAAACGGAGAATGAAGGTTGACAAGATCAGCAGGGATGAACTGTACGATTTCTGGTCACAAGTTACCGATCAGAGTTTTGATTCGCGGCTTCAGATCTTCTTCGACATGGTGGACAAGAACGAAGATGGAAGAATCGGTGAAGAAGAAGTAAAAGAGATCATCATGTTAAGTGCTTCTGCAAATAAGTTATCAAGATTGAAAGAGCAGGCTGAAGAATATGCAGCTCTTATCATGGAAGAGTTAGACCCCGAAAGACTTGGCTACATCGAGCTATGGCAATTGGAAACGCTTCTTTTACAAAAGGACACATATCTCAACTACAGCCAAGCTCTCAGCTACACTAGTCAAGCTTTGAGCCAGAACCTACACGGGCTAAGGAATAAAAGTCCTATACGTAGGGTAAGCCGCAGGTTGATATACTATTTGCAAGAGCATTGGAGGAGACTTTGGCTTTTAACATTGTGGGTTTGCATAATGATTGGGCTGTTCACTTGGAAGTTTCTTCAGTATAGGCAAAAAGATGCCTTTCATATCATGGGTTACTGTCTTCCCACAGCCAAAGGTGCTGCTGAGACTCTGAAGTTCAACATGGCACTTATACTCTTCCCAGTCTGCAGAAACACCATAACTTGGCTCAGGTCTACCAAGCTGTCTTACATTATACCTTTTGATGACAACATCAACTTTCACAAGACAATTGCTGGAGCCATCGTGATTGGTGTTATACTTCATGCTGGGGATCACCTTGCTTGTGATTTTCCAAGACTTGTAAGTACGTCTGAAGCCAAGTATCAGACTTATTTGAAAGATGTATTTGGTAAACATAAACCCAGTTACATAGACATAGTCAAAGGGATCGAGGGTGTGACTGGAATTTTGATGGTGGTTTTTATGGCAATAGCATTTACGCTTGCAACCAAATGGTTCAGGAGAAATCTCATCAAGCTACCTAAACCATTTAGTAGGCTAACTGGCTTCAATGCCTTCTGGTATTCACATCATCTGTTTGTCATTGTATATGTCCTGCTCGTCATCCACGGAGAAAAACTGTACATCGTGCACAAATGGCACTTGAAAACGACATGGATGTATCTTGCAGTTCCAGTTTTACTTTATGCGTCAGAAAGAATACTCAGATTATTTCGTTCTGGTTTATACACAGTCCGTCTTATAAAGGTGGCCATATATCCTGGAAATGTTCTCACATTACAAATGTCTAAGCCTCCTCAATTTCGGTACAAGAGCGGACAATACATGTTTGTACAATGTCCTGCTGTTTCTCCTTTTGAGTGGCATCCGTTTTCAATTACCTCAGCCCCTGGAGATGATTACCTGAGTGTTCACATTCGGCAACTGGGCGACTGGACTCAGGAGCTTAAAAGAGTGTTCTCTGAAGCCTGTGAGCCTCCTGTGTCCGGTAAGAGTGGACTTCTCAGGGCTGATGAAACCACAAAGAAAAGTTTGCCGAAGCTAAAGATAGATGGTCCTTATGGTGCACCAGCACAAGATTACAAAAAATATGATGTTTTGTTGCTTGTTGGTCTCGGAATAGGAGCAACACCTTTCATCAGCATTCTAAAAGATCTTATCAACAACATTATCAAAATGGAGGAGCTGGCGGATTCAATCTCTGATATAAGCAGAGGTTCAGACCTTAGTGTTGGGAGCACCGAGTCACCTTCTCCTAATAAAGTTGCTCCAAAACGGAAGAAAACACTAAAGACCACTAACGCATATTTCTACTGGGTTACAAGAGAGCAGGGCTCTTTTGATTGGTTCAAAGGAGTCATGAATGAAGTAGCTGAGCTTGATCAAAGGGGTGTCATTGAGATGCACAACTACTTGACTAGTGTATACGAGGAAGGCGATGCTAGATCTGCTCTCATTACCATGGTTCAAGCACTCAACCATGCCAAAAACGGAGTTGACATTGTTTCTGGGACTAGTGTGCGAACTCATTTTGCCAGGCCTAACTGGAAGAAGGTTTTCTCTAAAATGTGTTCAAAGCACTACAATGGACGAATAGGGGTATTCTATTGTGGTGCACCAGTTTTGGCCAAAGAACTTAGCAAGCTTTGCTTCGAGTTCAATGAAAAAGGTCCAACAAAATTTGAGTTTCACAAGGAGCATTTCTAA 2847 0.4626 MNGNSKHQRRWASDSVPGKSTVSAGTSPGSDSTFAGDEFVEVTLDLRDDDTIVLRSVEPASVINVIDDGGASSSGCETPAAVSRSPTIRRTSSRGLRHFSQELKAEAVAKARQFSQELKAELRRFSWSHGHGSRASSSSAPNGTGGAGGAVETALAARALRKQRAQLDRTRCGAHKALRGLRFISSKSNGVDPWIEVQRNFDTLSSDGYLYRDEFGQCIGMKDSKEFALELFDALGRKRRMKVDKISRDELYDFWSQVTDQSFDSRLQIFFDMVDKNEDGRIGEEEVKEIIMLSASANKLSRLKEQAEEYAALIMEELDPERLGYIELWQLETLLLQKDTYLNYSQALSYTSQALSQNLHGLRNKSPIRRVSRRLIYYLQEHWRRLWLLTLWVCIMIGLFTWKFLQYRQKDAFHIMGYCLPTAKGAAETLKFNMALILFPVCRNTITWLRSTKLSYIIPFDDNINFHKTIAGAIVIGVILHAGDHLACDFPRLVSTSEAKYQTYLKDVFGKHKPSYIDIVKGIEGVTGILMVVFMAIAFTLATKWFRRNLIKLPKPFSRLTGFNAFWYSHHLFVIVYVLLVIHGEKLYIVHKWHLKTTWMYLAVPVLLYASERILRLFRSGLYTVRLIKVAIYPGNVLTLQMSKPPQFRYKSGQYMFVQCPAVSPFEWHPFSITSAPGDDYLSVHIRQLGDWTQELKRVFSEACEPPVSGKSGLLRADETTKKSLPKLKIDGPYGAPAQDYKKYDVLLLVGLGIGATPFISILKDLINNIIKMEELADSISDISRGSDLSVGSTESPSPNKVAPKRKKTLKTTNAYFYWVTREQGSFDWFKGVMNEVAELDQRGVIEMHNYLTSVYEEGDARSALITMVQALNHAKNGVDIVSGTSVRTHFARPNWKKVFSKMCSKHYNGRIGVFYCGAPVLAKELSKLCFEFNEKGPTKFEFHKEHF* 949
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0379 948 SFLD NADPH oxidase subgroup (NOX) 110 948 - -
Lja4g0379 948 MobiDBLite consensus disorder prediction 1 33 - -
Lja4g0379 948 ProSitePatterns EF-hand calcium-binding domain. 275 287 IPR018247 -
Lja4g0379 948 MobiDBLite consensus disorder prediction 129 149 - -
Lja4g0379 948 Gene3D - 167 283 - -
Lja4g0379 948 PRINTS Cytochrome B-245 heavy chain signature 526 549 IPR000778 GO:0016020|GO:0016491
Lja4g0379 948 PRINTS Cytochrome B-245 heavy chain signature 726 739 IPR000778 GO:0016020|GO:0016491
Lja4g0379 948 PRINTS Cytochrome B-245 heavy chain signature 749 766 IPR000778 GO:0016020|GO:0016491
Lja4g0379 948 SFLD Ferric reductase subgroup (FRE) 369 948 - -
Lja4g0379 948 MobiDBLite consensus disorder prediction 130 144 - -
Lja4g0379 948 CDD EFh 226 292 IPR002048 GO:0005509
Lja4g0379 948 PANTHER RESPIRATORY BURST OXIDASE2 24 948 - -
Lja4g0379 948 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 620 740 IPR017927 GO:0016491
Lja4g0379 948 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 741 948 IPR039261 -
Lja4g0379 948 MobiDBLite consensus disorder prediction 1 35 - -
Lja4g0379 948 SUPERFAMILY EF-hand 194 344 IPR011992 -
Lja4g0379 948 PANTHER NADPH OXIDASE 24 948 - -
Lja4g0379 948 SUPERFAMILY Riboflavin synthase domain-like 623 736 IPR017938 -
Lja4g0379 948 Pfam Ferric reductase NAD binding domain 744 930 IPR013121 GO:0016491
Lja4g0379 948 Pfam FAD-binding domain 624 737 IPR013112 GO:0016491
Lja4g0379 948 Pfam Respiratory burst NADPH oxidase 166 265 IPR013623 GO:0004601|GO:0050664
Lja4g0379 948 Pfam Ferric reductase like transmembrane component 425 581 IPR013130 -
Lja4g0379 948 Gene3D - 735 948 IPR039261 -
Lja4g0379 948 Coils Coil 293 313 - -
Lja4g0379 948 CDD NOX_Duox_like_FAD_NADP 627 890 - -
Lja4g0379 948 Gene3D Translation factors 611 703 - -
Lja4g0379 948 ProSiteProfiles EF-hand calcium-binding domain profile. 262 297 IPR002048 GO:0005509
Lja4g0379 948 MobiDBLite consensus disorder prediction 70 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0379 Lja-Chr4 3034916 3044468 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0379 8 948 Miscellaneous Gene Families AT1G64060 77.484 0.0 1527
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0379 K13447 - gmx:100801077 1638.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0379 4 3034916 3044468 Lja4g0379 4 3034916 3044468 ECH