Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0343 ATGGAAAAACTCATTTGCATGTTCCCTTTGATTCTTCTTCTGTGTTCCCCTTTTGCTTTCGCTGGCCATGACTACGGTCTAGCTCTTAGCAAGAGCATTCTCTTCTACGAAGCTCAGAGATCTGGTGTTCTTCCCTCTCATCAGAGAGTCACTTGGAGATCCCATTCTGGTCTTCAAGACGGAAAAGCAAGCGGGGTGGATCTTGTCGGTGGGTACTATGATGCAGGGGACAATGTCAAGTTTGGGTTACCCATGGCATTCACCGTTACAATGTTGTCTTGGAGCATCATTGAATACGGCAAACAAATGTCTTCTAGTGGTGAGCTTGGTCACGCCATGGAAGCTGTGAAATGGGGTACTGATTACTTCATCAAAGCTCATCCTGAACCCAATGTTCTCTACGGAGAGGTAGGAGACGGGAACACTGACCATTACTGTTGGCAAAGGCCAGAGGACATGACTACAGACCGCCGCGCTTACAGGATCGATCCAAGTAATCCCGGGTCGGATCTCGCCGGAGAAACTGCCGCCGCCATGGCCGCCGCGTCCATTGTTTTCCGCCACTCTAACCCTTCATATTCTAGCGTACTCCTCCGCCATGCTTACCAGTTGTTTGATTTTGCGGACAAATATAGAGGCAAATATGACAGCAGCATTACAGTGGCTCAAAAGTACTACAGATCCATCAGTGGTTACAATGATGAATTGCTCTGGGCTGCTGCGTGGTTGTACCAAGCATCTAACAATCAATACTACCTTGATTACCTTGGTAGAAATGGTGACTCCATGGGTGGAACTGGTTGGGGCATGACTGAGTTTAGTTGGGATGTCAAATATGCTGGAGTTCAGACTCTTGTTGCCAAGTTCCTTATGCAAGGCAGAGCTGGCCTTCATGCACCGGTATTTGAGAGATATCAGCAGAAGGCTGAGAATTTCATGTGTTCGTGCCTTGGAAAGGCTAATAAAAATGTTCAGAAGACTCCCGGTGGCCTCATTTTCCGCCAGAGATGGAACAACTTGCAGTTTGTCACCAGTGCCTCATTCTTGGCCACTGTCTACTCTGACTACCTTACTTCTTCTGGTGGACACTTGAGATGTGCTGCTGGCAATGTTCGTCCTGTTGAGCTTCTCTCCTTTGCCAAGTCTCAGGTGGACTACATTCTTGGGGACAACCCTAGAGCTACAAGTTACATGGTGGGCTATGGAAGCAACTTCCCTCAGAGAACTCACCACCGAGGTTCATCCATTGTTTCCATCAAGGTTGACCGTTCATTTGTCACCTGCCGCGGTGGTTATGCTACTTGGTATAGTAGCAAAAGGAGCGATCCTAATGTCCTTACCGGTGCTATTGTTGGCGGTCCTGATGCATATGATGACTTTGCTGATGAAAGAAATAACTATGAGCAAACAGAGCCAGCAACCTACAACAATGCTCCTCTAATAGGTACTCTAGCACGACTAAGTGGAGGTCATTCCGGGTATAACCAGCTCCTTCCAGTTGTTGTTCAAGCTCCTAAGCCTGCTGTTACCAAGCATCAAACATTTCCCACTCCCAAGACAACTCCATCTCCAGCTTCATGGTCAGGCCCAGTTTCCATTGAACACAAAATGACCGCCTCATGGGTTGCCAATGGAAAGACTTACTACAGATACTCAGCAGTGGTGACTAACAAATCCACCAAGAACCTCCAGTCTCTCAACCTTTCAATTTCCAAGCTTTATGGCCCGATCTGGGGACTCACGAAGTTCGGTGATTCATACACATTCCCTTCATGGATCAGTTCATTATCAGCTGGTAAAAGCCTTGAATTTGTCTACATCCATGCTGCTAATTCTCCAGCAGATGTCTCAGTCGCCAAGTACTTATTGGCCTGA 1875 0.4741 MEKLICMFPLILLLCSPFAFAGHDYGLALSKSILFYEAQRSGVLPSHQRVTWRSHSGLQDGKASGVDLVGGYYDAGDNVKFGLPMAFTVTMLSWSIIEYGKQMSSSGELGHAMEAVKWGTDYFIKAHPEPNVLYGEVGDGNTDHYCWQRPEDMTTDRRAYRIDPSNPGSDLAGETAAAMAAASIVFRHSNPSYSSVLLRHAYQLFDFADKYRGKYDSSITVAQKYYRSISGYNDELLWAAAWLYQASNNQYYLDYLGRNGDSMGGTGWGMTEFSWDVKYAGVQTLVAKFLMQGRAGLHAPVFERYQQKAENFMCSCLGKANKNVQKTPGGLIFRQRWNNLQFVTSASFLATVYSDYLTSSGGHLRCAAGNVRPVELLSFAKSQVDYILGDNPRATSYMVGYGSNFPQRTHHRGSSIVSIKVDRSFVTCRGGYATWYSSKRSDPNVLTGAIVGGPDAYDDFADERNNYEQTEPATYNNAPLIGTLARLSGGHSGYNQLLPVVVQAPKPAVTKHQTFPTPKTTPSPASWSGPVSIEHKMTASWVANGKTYYRYSAVVTNKSTKNLQSLNLSISKLYGPIWGLTKFGDSYTFPSWISSLSAGKSLEFVYIHAANSPADVSVAKYLLA* 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0343 624 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 3. 460 478 IPR033126 -
Lja4g0343 624 Pfam Carbohydrate binding domain CBM49 531 608 IPR019028 GO:0030246
Lja4g0343 624 SUPERFAMILY Six-hairpin glycosidases 22 498 IPR008928 GO:0005975
Lja4g0343 624 Gene3D - 22 490 IPR012341 GO:0005975
Lja4g0343 624 PANTHER ENDOGLUCANASE 11 589 - -
Lja4g0343 624 PANTHER ENDO-1,4-BETA-GLUCANASE 11 589 - -
Lja4g0343 624 SMART CBM49_2 531 611 IPR019028 GO:0030246
Lja4g0343 624 Pfam Glycosyl hydrolase family 9 25 484 IPR001701 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0343 Lja-Chr4 2739679 2744952 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0343 15 624 Glycoside Hydrolase AT1G64390 79.016 0.0 1012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0343 K01179 - gmx:100801949 1134.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0343 4 2739679 2744952 Lja4g0343 4 2739679 2744952 ECH