Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0339 ATGGATAGTCCTGCAAAATTAAAAATCATCCCTGATCACTTTCAACTTCCAGAATCAAGTATAGAATCTCCTGTGAGCAGAACATCTTCTAGTTCTATTACAGAACCTGGAACCGATCAATCTTCGAGGTCCTCACGCCATCTGTGGACTCGGAGAAAATGTAGGACACGTCTTATGTTGAACTTGTTTACTCTTCGGGGGCTGCCATGGGGGTCCGATACTGGAGGTCAGGAAAAGGTTGAGCTAACGGCTGCGGAACTAGAGTCACTTCGACAGGAGCTTGCTGATATAGATGAGAGGGAAGCTCTCTTGAAAGCCCGGTTGGAACATGTTGATGAAGTTTTGCGGTCAGCTTGTCTATCTGGCTATTTATACATTCGAACTAGATGGGCAACACTGCCAGGAGAACTTCCACCTATAGATGATACTGAAGTAGATGATTGGCTTCCTCGCTTTGTCGTTCTCCATGGAACATGTATATTCTTATATTTATTGTCTACAGATATAAGCCCTCAGGACTCAACTCTTCTATCTGATATTGTTGAAGTAGGGAGATTGCCATGTTTTAAGCGTGAAGATGATGATGTTCGATATGCCTTTTATATCTTAACTTGTCATGGGTTACGCTACGAGTGCTCAAGCAACTCTATGATACAGGTGGACTCTTGGTTATCAGCTCTACAACAGCACTGCAAACTGAAATCTGATACATCAATGGCCTCACGCATTTCCAAAGCCGCGAGGTCCCTTCTCTCTGCTTCCACCACCGCCTCTCGTTTCTACCACTCTCAAGGACGCGCTGTTGCGGCTGCAGCAGCTGTTTCATTCAGCTCTAAGGCTCCTGTTTTGGCTTCCTATTATGGGAGGGGTGGTTCTGGAAGTGGATCTGCAACATGGGTTTCAGGAGCTCTTGCTCTTCCTGCTGCAGCTTACATGCTTCAAGATCAGGAGGTGCATGCTGCTGAGCTGGAGCGTACTTTCATTGCCATTAAGCCTGATGGAGTGCAGAGAGGGCTGATTTCTGAGATTATTTCTCGTTTTGAGAGGAAAGGGTTCAAGCTTGTTGGAATTAAAGTATTGATTCCTTCAAAGGAATTTGCCCAAAAGCATTATCACGACCTGAAAGAAAGACCATTCTTCAATGGGCTGTGTGAATTCCTAAGCTCTGGCCCTGTTATTGCAATGGTGTGGGAAGGAGAGGGAGTTATCACCTATGGCCGAAAACTAATTGGAGCGACAGATCCTCAGAAATCACAACCTGGAACCATTAGGGGTGATCTAGCTGTTGTTGTTGGAAGAAATATCATCCATGGGAGCGATGGTCCGGAGACTGCCAAGGATGAGATTAAGTTGTGGTTTAAGCCAGAGGAGTTGGTTAATTTCACTAGCAATGCAGAGAAGTGGGTTTATGGTGTCAACTGA 1422 0.4536 MDSPAKLKIIPDHFQLPESSIESPVSRTSSSSITEPGTDQSSRSSRHLWTRRKCRTRLMLNLFTLRGLPWGSDTGGQEKVELTAAELESLRQELADIDEREALLKARLEHVDEVLRSACLSGYLYIRTRWATLPGELPPIDDTEVDDWLPRFVVLHGTCIFLYLLSTDISPQDSTLLSDIVEVGRLPCFKREDDDVRYAFYILTCHGLRYECSSNSMIQVDSWLSALQQHCKLKSDTSMASRISKAARSLLSASTTASRFYHSQGRAVAAAAAVSFSSKAPVLASYYGRGGSGSGSATWVSGALALPAAAYMLQDQEVHAAELERTFIAIKPDGVQRGLISEIISRFERKGFKLVGIKVLIPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSQPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEELVNFTSNAEKWVYGVN* 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0339 473 Coils Coil 80 107 - -
Lja4g0339 473 MobiDBLite consensus disorder prediction 19 44 - -
Lja4g0339 473 SMART ndk_5 323 460 IPR034907 -
Lja4g0339 473 PRINTS Nucleoside diphosphate kinase signature 370 389 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Lja4g0339 473 PRINTS Nucleoside diphosphate kinase signature 411 427 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Lja4g0339 473 PRINTS Nucleoside diphosphate kinase signature 326 348 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Lja4g0339 473 PRINTS Nucleoside diphosphate kinase signature 390 407 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Lja4g0339 473 PRINTS Nucleoside diphosphate kinase signature 434 453 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Lja4g0339 473 SUPERFAMILY PH domain-like 120 232 - -
Lja4g0339 473 ProSitePatterns Nucleoside diphosphate kinases active site. 434 442 IPR023005 -
Lja4g0339 473 Hamap Nucleoside diphosphate kinase [ndk]. 323 458 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Lja4g0339 473 Pfam Nucleoside diphosphate kinase 324 457 IPR034907 -
Lja4g0339 473 MobiDBLite consensus disorder prediction 18 48 - -
Lja4g0339 473 ProSiteProfiles PH domain profile. 117 232 IPR001849 -
Lja4g0339 473 CDD NDPk_I 324 453 - -
Lja4g0339 473 SMART PH_update 118 234 IPR001849 -
Lja4g0339 473 PANTHER OS05G0595500 PROTEIN 1 239 - -
Lja4g0339 473 SUPERFAMILY Nucleoside diphosphate kinase, NDK 323 470 IPR036850 -
Lja4g0339 473 CDD PH 120 227 - -
Lja4g0339 473 Gene3D - 116 240 IPR011993 -
Lja4g0339 473 PANTHER OS05G0595500 PROTEIN 1 239 - -
Lja4g0339 473 Gene3D - 314 471 IPR036850 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0339 Lja-Chr4 2709731 2717464 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0339 - K00940 cam:101499802 701.049
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0339 4 2709731 2717464 Lja4g0339 4 2709731 2717464 ECH