Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0331 ATGGAGAATCTCATATCCCTTGTGAACAAAATCCAGAGAGCTTGCACCGCCTTAGGTGATCACGGTGAAGAAGCTAGTGCTCTCCCTACTCTCTGGGATTCCCTTCCTGCTATCGCCGTCGTCGGTGGCCAGAGCTCTGGAAAGTCCTCGGTGTTGGAGAGCGTTGTTGGCAAAGATTTCTTACCTCGTGGATCAGGGATTGTTACCCGGCGACCGCTCGTCTTGCAGCTTCACAAGATTGAAGAGGGTAGCAGGGAATATGGGGAGTTCCTTCACCTCCCGAGGAAAAAATTCTATGATTTTGTTGCTGTAAGAAAGGAAATTCAAGATGAAACTGATAGAGAGACGGGACGAAGTAAACAAATTTCAAGTGTCCCAATTCATCTTAGCATATACTCTCCCAATGTTGTTAACTTGACGCTCATTGATCTTCCTGGACTTACGAAGGTAGCTGTAGGTACGTCACAAATAGACATGTCTTTTTGGTCTTTGATTTTAAGACAGATAAGTGGGAGTTCCTCAGTTTTTGTTTTTATGACGTGCATGATATTACTAGATTTTTATTGTGAAATTACAGAGGGTCAACCAGATAGTATTGTCCATGACATTGAGAATATGGTTCGTTCGTTCATTGAGAAGCCGAACTGTATAATTTTGGCCATTTCACCTGCTAATCAAGATCTTGCAACATCTGATGCAATTAAAATTTCCCGTGAAGTGGATCCTACTGGTGAACGGACCATTGGAGTTTTGACAAAGATTGATCTTATGGACAAGGGTACGGACGCTGTTGATATATTGGAAGGAAGAGCATACAGGTTAAAATTTCCCTGGGTTGGTGTTGTGAATAGATCACAAGCAGATATAAACAAGAATGTTGACATGATTGCTGCTAGGCGTAGAGAACGCGACTACTTTTTAACTACCCCTGAATATAAACACCTGGCTAAGAGAATGGGTTCTGAGCATCTGGCAAAAATGCTCTCAAAGCATCTGGAGACGGTAATCAAATCCAAAATTCCCGGCATTCAGTCTCTTATTAACAAAACTATTGCGGAGATTGAATCTGAACTTTCTCGTTTAGGGAAGCCAATTGCAGCGGATGCTGGGGGCAAGTTATATGCAATCATGGAAATATGCCGCTCGTTTGATCAAATATTTAAAGATCATCTTGATGGCGTGCGGCCTGGAGGTGATAAAATTTATAATGTCTTTGACAATCAGCTCCCTGCAGCTTTGAAAAGGTTGCAATTTGATAAACAGCTTTCAATGGAAAACATAAGGAAACTTATTACAGAAGCTGATGGGTATCAACCACATCTAATAGCTCCAGAACAAGGATACCGTCGACTCATTGAATCTACCCTGATCACTATCAGGGGCCCTGCTGAGGCAGCTGTTGATGCGGTTCATTCCCTACTAAAGGACTTGGTTCACAAAGCTGTTAGTGAGACTCTGGACTTGAAGCAATATCCTGGTCTGCGGGCTGAAGTTGGGGCTGCAGCTATTGACTCACTAGAAAAAATGAGGGACGAAAGCAAAAAAGCGACACTACAGCTGGTTGATATGGAGTATGGCTATCTGACAGTTGATTTCTTTCGGAAGCTTCCTCAAGATGTAGATAAGGGTGGCAATCCCACACATTCAATTTTTGATAGATATAATGATTCATATCTAAGGCGAATTGGAACCACAGTTTTGTCTTATGTCAATATGGTCTGTGCTACTCTGCGGCATACAATTCCAAAGTCAATCGTCTATTGTCAAGTGCGGGAGGCAAAACGAACTCTACTTGATTACTTTTTCACTGAGCTAGGCAAAATGGATATGAAGCGTTTGTCCTCATTACTGAATGAGGATCCTGCAATTATGGAACGACGTAGTGGCCTAGCAAAGAGACTGGAGTTATATCGAAGTGCACAAGCTGAAATAGATGCAGTTGCTTGGTCAAAGTAA 1956 0.4238 MENLISLVNKIQRACTALGDHGEEASALPTLWDSLPAIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIEEGSREYGEFLHLPRKKFYDFVAVRKEIQDETDRETGRSKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVGTSQIDMSFWSLILRQISGSSSVFVFMTCMILLDFYCEITEGQPDSIVHDIENMVRSFIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTIGVLTKIDLMDKGTDAVDILEGRAYRLKFPWVGVVNRSQADINKNVDMIAARRRERDYFLTTPEYKHLAKRMGSEHLAKMLSKHLETVIKSKIPGIQSLINKTIAEIESELSRLGKPIAADAGGKLYAIMEICRSFDQIFKDHLDGVRPGGDKIYNVFDNQLPAALKRLQFDKQLSMENIRKLITEADGYQPHLIAPEQGYRRLIESTLITIRGPAEAAVDAVHSLLKDLVHKAVSETLDLKQYPGLRAEVGAAAIDSLEKMRDESKKATLQLVDMEYGYLTVDFFRKLPQDVDKGGNPTHSIFDRYNDSYLRRIGTTVLSYVNMVCATLRHTIPKSIVYCQVREAKRTLLDYFFTELGKMDMKRLSSLLNEDPAIMERRSGLAKRLELYRSAQAEIDAVAWSK* 652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0331 651 ProSiteProfiles GED domain profile. 559 651 IPR020850 -
Lja4g0331 651 PANTHER DYNAMIN-LIKE PROTEIN 1E 177 650 - -
Lja4g0331 651 PRINTS Dynamin signature 242 258 IPR022812 -
Lja4g0331 651 PRINTS Dynamin signature 35 53 IPR022812 -
Lja4g0331 651 PRINTS Dynamin signature 265 284 IPR022812 -
Lja4g0331 651 PRINTS Dynamin signature 60 77 IPR022812 -
Lja4g0331 651 PRINTS Dynamin signature 223 241 IPR022812 -
Lja4g0331 651 SMART GED_2 554 647 IPR003130 GO:0003924|GO:0005525
Lja4g0331 651 Pfam Dynamin central region 262 529 IPR000375 -
Lja4g0331 651 CDD DLP_1 34 341 IPR001401 GO:0003924|GO:0005525
Lja4g0331 651 PANTHER DYNAMIN 177 650 IPR022812 -
Lja4g0331 651 PANTHER DYNAMIN 2 154 IPR022812 -
Lja4g0331 651 PANTHER DYNAMIN-LIKE PROTEIN 1E 2 154 - -
Lja4g0331 651 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 30 349 IPR027417 -
Lja4g0331 651 Gene3D Dynamin, middle domain 367 616 - -
Lja4g0331 651 SMART dynamin_3 1 292 IPR001401 GO:0003924|GO:0005525
Lja4g0331 651 Gene3D - 188 350 IPR027417 -
Lja4g0331 651 Pfam Dynamin GTPase effector domain 555 647 IPR003130 GO:0003924|GO:0005525
Lja4g0331 651 ProSiteProfiles Dynamin-type guanine nucleotide-binding (G) domain profile. 32 341 IPR030381 GO:0005525
Lja4g0331 651 ProSitePatterns Dynamin-type guanine nucleotide-binding (G) domain signature. 61 70 IPR019762 -
Lja4g0331 651 Gene3D - 1 183 IPR027417 -
Lja4g0331 651 Pfam Dynamin family 38 254 IPR045063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0331 Lja-Chr4 2669240 2674734 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0331 - - lja:Lj4g3v3004140.1 1142.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0331 4 2669240 2674734 Lja4g0331 4 2669240 2674734 ECH