Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0326 ATGAATTGGTTTTGCTTCAGACCAAAGACTAAACCAGAAAAATCCGCTCTTCTTGCTCTGGAGACAACTTTTACTGTGAATGAGGTTGAAGCTCTATTTCGCTTGTTTAAGAAGCTAAGCAGTTCAATTGTCGATGATGGCTTAATTCACAAGGAGGAGTTCCAACTTGCTCTTTTCAGAAATGGTTGCAAGCATAATCTATTTGCAAGCAGGGTATTTGATATGTTTGATATTAAGTGTAATGGAGTAATTGACTTTGGAGAATTTGTTCGCTCACTGAGCGTCTTTCATCCAAACACACCTGAAGAGAAGAAAATTGAATTTGCATTTAAATTGTTTGACCTTCGGCGGACTGGATACATAGAGTATAGTGAATTAAAGGAGATGGTCTTGGCTATTTTGACTGAGTCAGATGTTACAGTTCCAGATGATGATGTTGAATCCATTGTGGAGAAGTCAATGAAGGAGGTCGACACAAAAGGAGATGGGAAGATTGATGAGGAAGAGTGGAAATTGTATGCAACAAAAAATCCTTCTCTTTTGAAGATCATGACCCTACCATATCTAAAGGATATAACCATGGCCTTTCCCAGCTTTGTTTTGCACACCGAGGTGGAAGACTAG 624 0.3894 MNWFCFRPKTKPEKSALLALETTFTVNEVEALFRLFKKLSSSIVDDGLIHKEEFQLALFRNGCKHNLFASRVFDMFDIKCNGVIDFGEFVRSLSVFHPNTPEEKKIEFAFKLFDLRRTGYIEYSELKEMVLAILTESDVTVPDDDVESIVEKSMKEVDTKGDGKIDEEEWKLYATKNPSLLKIMTLPYLKDITMAFPSFVLHTEVED* 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0326 207 CDD EFh 105 170 IPR002048 GO:0005509
Lja4g0326 207 SUPERFAMILY EF-hand 18 200 IPR011992 -
Lja4g0326 207 CDD EFh 71 130 IPR002048 GO:0005509
Lja4g0326 207 PRINTS Recoverin family signature 165 185 - -
Lja4g0326 207 PRINTS Recoverin family signature 10 24 - -
Lja4g0326 207 PRINTS Recoverin family signature 72 93 - -
Lja4g0326 207 PRINTS Recoverin family signature 119 137 - -
Lja4g0326 207 Pfam EF-hand domain pair 103 169 IPR002048 GO:0005509
Lja4g0326 207 ProSiteProfiles EF-hand calcium-binding domain profile. 145 180 IPR002048 GO:0005509
Lja4g0326 207 SMART efh_1 105 133 IPR002048 GO:0005509
Lja4g0326 207 SMART efh_1 149 177 IPR002048 GO:0005509
Lja4g0326 207 SMART efh_1 68 96 IPR002048 GO:0005509
Lja4g0326 207 PANTHER CALCINEURIN B 1 206 IPR045198 GO:0005509|GO:0019722|GO:0019900
Lja4g0326 207 Pfam EF-hand domain pair 46 91 IPR002048 GO:0005509
Lja4g0326 207 ProSiteProfiles EF-hand calcium-binding domain profile. 64 99 IPR002048 GO:0005509
Lja4g0326 207 ProSiteProfiles EF-hand calcium-binding domain profile. 101 136 IPR002048 GO:0005509
Lja4g0326 207 Gene3D - 16 207 - -
Lja4g0326 207 PANTHER CALCINEURIN B-LIKE PROTEIN 8 1 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0326 Lja-Chr4 2618776 2622607 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0326 22 207 EF-hand Containing Proteins AT5G24270 63.978 2.47e-83 244
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0326 K06268 - mnt:21390233 288.115
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0326 4 2618776 2622607 Lja4g0326 4 2618776 2622607 ECH