Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0317 ATGGCAAGCATTGCTGGTTCATGTTCTTTAGGAGCATTGCTCGCACATAAAGTCTCAGAAGGCAATAATGGGGTGTCCCTGGTTCAGTATGATGGGCTTAGATTGGCGCAGAGGATGCAAATGCCTTCAGCTGCAAGCATGCCAAAAGGGTGCTTGTTGTCTTCAGCCCCGAAATGCAGAACTATTAAGGCCACAGCTTCTCCAACTGCAGCAGCAGCTCCTAAAAGAGAACAAGATCCCAAAAAGCGAGTAGTAATAACAGGAATGGGGCTTGTTTCCGTCTTTGGCAGTGACATTGATACATTTTACAACAAGCTTCTTGCGGGAGAAAGTGGGATAAGTGTAATAGATAGGTTTGACCCCTCAAAATTCTCTGTCCGTTTTGGTGGCCAGATACGTGATTTCTCTTCAGAAGGTTACATTGATGGCAAGAATGACCGGCGCCTCGATGATTGCTGGAGGTATTGCTTAGTTGCAGGCAAGAGGGCTCTTGATGATGCCAACCTTGGACAGGAAGCGCTTAAGAATTTGGACAAAACAAGAATAGGATCTCTAGTTGGAACAGGAATGGGAGGTTTAACAGCTTTCAGCACTGGTGTGGGAGCTCTTATAGAGAAGGGATATAAGAAAATGTCTCCATTTTTCATTCCCTACTCCATCACCAACATGGGTTCTGCTTTGTTGGCTATAGACACTGGCCTAATGGGTCCCAATTATTCCATTTCCACTGCTTGTGCAACAGCAAATTACTGCTTTTATGCAGCTGCTAATCATATCAGAAGAGGTGAAGCAGATATCATGGTGGTTGGTGGGACTGAAGCTGCAATAATGCCTACTGGTGTTGGAGGCTTCATTGCTTGCAGGGCTTTGTCTCAGAGGAATGAGGACCCCAAGAAGGCTTCAAGACCATGGGACAAAGATCGTGATGGTTTTGTCATGGGTGAAGGCTCTGGCGTGCTGATAATGGAGAGCTTGGAGAGTGCAACAAAAAGGGGAGCCACGATAATAGCAGAATATCTGGGGGGTGCCATAACTTGTGATGCTCATCACATGACTGATCCAAGGTCGGATGGACTTGGAGTTTCATCTTGCATAAGGAAGAGTTTACAAGATGCTGGGGTTTCCCCTGAAGAGGTGAACTATATCAATGCTCATGCCACTTCAACACTGGCAGGTGACTTGGCTGAGGTTAATGCAATCAAACAAGTTTTTAAGGACACATCAGAATTGAAAATGAATGGCACTAAGTCAATGATTGGTCATGGTCTTGGGGCTTCTGGTGGTTTGGAAGCTATAGCAACTATCAAAGCGATAACAACTGGCTGGTTGCATCCAACCATTAACCAAGATAACATTGAGGAGGATGTTACAATTGACACTGTCCCTAATGTCAAGAAGCAGCATGAAGTTAATGTTGCTATCTCCAACTCATTTGGGTTCGGTGGACACAATTCAGTAGTTGTCTTTGCTCCATTCAGGCCCTAA 1485 0.4519 MASIAGSCSLGALLAHKVSEGNNGVSLVQYDGLRLAQRMQMPSAASMPKGCLLSSAPKCRTIKATASPTAAAAPKREQDPKKRVVITGMGLVSVFGSDIDTFYNKLLAGESGISVIDRFDPSKFSVRFGGQIRDFSSEGYIDGKNDRRLDDCWRYCLVAGKRALDDANLGQEALKNLDKTRIGSLVGTGMGGLTAFSTGVGALIEKGYKKMSPFFIPYSITNMGSALLAIDTGLMGPNYSISTACATANYCFYAAANHIRRGEADIMVVGGTEAAIMPTGVGGFIACRALSQRNEDPKKASRPWDKDRDGFVMGEGSGVLIMESLESATKRGATIIAEYLGGAITCDAHHMTDPRSDGLGVSSCIRKSLQDAGVSPEEVNYINAHATSTLAGDLAEVNAIKQVFKDTSELKMNGTKSMIGHGLGASGGLEAIATIKAITTGWLHPTINQDNIEEDVTIDTVPNVKKQHEVNVAISNSFGFGGHNSVVVFAPFRP* 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0317 494 ProSitePatterns Beta-ketoacyl synthases active site. 236 252 IPR018201 GO:0004315|GO:0006633
Lja4g0317 494 Pfam Beta-ketoacyl synthase, C-terminal domain 337 449 IPR014031 -
Lja4g0317 494 PANTHER 3-OXOACYL-(ACYL CARRIER) SYNTHASE II 41 494 - -
Lja4g0317 494 SUPERFAMILY Thiolase-like 82 333 IPR016039 GO:0016746
Lja4g0317 494 SUPERFAMILY Thiolase-like 296 490 IPR016039 GO:0016746
Lja4g0317 494 Pfam Beta-ketoacyl synthase, N-terminal domain 82 328 IPR014030 -
Lja4g0317 494 PANTHER POLYKETIDE SYNTHASE-RELATED 41 494 IPR000794 -
Lja4g0317 494 CDD KAS_I_II 82 489 IPR000794 -
Lja4g0317 494 SMART Beta-ketoacyl synthase 84 494 IPR020841 -
Lja4g0317 494 Gene3D - 47 493 IPR016039 GO:0016746
Lja4g0317 494 TIGRFAM fabF: beta-ketoacyl-acyl-carrier-protein synthase II 82 489 IPR017568 GO:0006633|GO:0016747
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0317 Lja-Chr4 2563470 2567116 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0317 65 494 Acyl Lipid Metabolism Gene Families AT5G46290 75.336 0.0 711
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0317 K09458 - gmx:100798044 837.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0317 4 2563470 2567116 Lja4g0317 4 2563470 2567116 ECH