Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0310 ATGCCAGGTCTCGTCAAAACTCCACCGCTCCGAATCACCATGCCCCAAACTCAAACTCCCACCCGAAGATCCGAACCCGCCGCAACCAACAACAAAACTCCCTCCCCGTCGCCCCTCCCGAAGAAGCCACCATCTCCGTCCCCTTCCACCCGCTCCTCCGCCAAGAAGAAGACTCCAGAAACCCCTACCAACCCTGACGCCTCCCTCGACAACCCGGATCTAGGCCCATTCCTCCTCAAACTAGCCCGCGACACCATCGCCTCCGGCGAAGGCCCCACCAAAGCCCTCGACTACGCCATCCGCGCCTCAAAGTCCTTCGAGATCTGCGCCGCTGACGGCGAGCCCAGCCTCGACCTCGCCATGAGCCTCCACGTCCTCGCCGCCATCTACTGCAGCCTCGGCCGCTTCGAGGAAGCCGTCCCGGTACTCGAGCGCGCGATCCAGGTCCCTGACGTCGCTCGCGGCGCGGATCACGCCCTCGCCGCGTTCTCCGGCCATATGCAGTTAGGCGATACGTTTTCCATGCTCGGACATGTTGATAAATCGATTTCCTGCTACGACCAGGGTCTTCAGATTCAGATCCAAACGCTTTGTGATACCGATCCACGCGTCGGTGAAACGTGCAGGTACCTCGCGGAGGCGAATGTTCAAGCGATGCAGTTTGACAGAGCGGAGGAGCTTTGCAAGACAACGCTCGAGATCCACCGCGCGCATAGCGAGCCTGCTTCACTGGAAGAAGCTGCGGATCGGAGGCTCATGGCGCTTATCTGCGAGGCGAAAGGAGATTACGAAGCCGCCCTTGAGCACCTCGTGCTGGCGTCCATGGCTATGATCGCGAATGGACAGGACAATGAAGTTGCCTCCATTGATGTTAGCATCGGGAACATGTACATGTCGCTGTGCCGATTCGATGAGGCTATATTTTCCTACCAGAAGGCGCTCACCGTGTTCAAGGCGTCGAAGGGGGAGAATCATCCTTCGGTGGCGTCGGTGTTTGTGCGCCTTGCTGATTTGTACCACAGGACCGGGAAGCTTCGGGAGTCGAAGTCGTACTGTGAGAATGCCATGAGGATATACTCTAAGCCGGTGCCGGGAACCACGCCGGAGGAGATTGCCGGTGGGTTGACTGAGGTTTCCGCGATTTTCGAGTCGGTGGATGAGCCGGAGGAGGCGCTGAAGCTGCTGCAGAGGGCGATGAAGTTGTTGGAGGAGAAACCGGGGCAGCAGAGCACGGTTGCGGGGATAGAAGCGAGGATGGGAGTAATGTATTACATGACTGGGAGGTATGAGGATGCGAGGAGCAGTTTTGAGAGTGCGGTGGCGAAACTGAGAGCGAGTGGGGAGAGGAAATCTGCGTTTTTCGGAGTTGTGTTGAACCAGATGGGGTTGGCATGTGTGCAGCTGTTCAAGATAGATGAGGCTGCTGAGTTGTTTGAGGAAGCTAGGACGATTCTTGAGCAGGAGTGTGGCCCTTGTCATCAAGATACTCTTGGAGTGTACAGCAACCTTGCAGCAACTTATGATGCCATGGGAAGAGTGGGAGATGCAATTGAAATCTTAGAATATGTCCTTAAGTTGAGGGAAGAAAAGCTTGGAATAGCAAATCCTGATTTTGAAGATGAGAAGCGTCGGCTGGCTGAGCTCCTGAAAGAAGCAGGCAAGACGCGAGACAGGAAAGCGAAATCTCTCGAAAACCTCATTGATCCCAACTCAAAGAGGACAAAGAAGGAGGGGAATAAGAGGTGGCCTGGTTTGGGGTTTAGAATTTAA 1770 0.5576 MPGLVKTPPLRITMPQTQTPTRRSEPAATNNKTPSPSPLPKKPPSPSPSTRSSAKKKTPETPTNPDASLDNPDLGPFLLKLARDTIASGEGPTKALDYAIRASKSFEICAADGEPSLDLAMSLHVLAAIYCSLGRFEEAVPVLERAIQVPDVARGADHALAAFSGHMQLGDTFSMLGHVDKSISCYDQGLQIQIQTLCDTDPRVGETCRYLAEANVQAMQFDRAEELCKTTLEIHRAHSEPASLEEAADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVASIDVSIGNMYMSLCRFDEAIFSYQKALTVFKASKGENHPSVASVFVRLADLYHRTGKLRESKSYCENAMRIYSKPVPGTTPEEIAGGLTEVSAIFESVDEPEEALKLLQRAMKLLEEKPGQQSTVAGIEARMGVMYYMTGRYEDARSSFESAVAKLRASGERKSAFFGVVLNQMGLACVQLFKIDEAAELFEEARTILEQECGPCHQDTLGVYSNLAATYDAMGRVGDAIEILEYVLKLREEKLGIANPDFEDEKRRLAELLKEAGKTRDRKAKSLENLIDPNSKRTKKEGNKRWPGLGFRI* 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0310 589 MobiDBLite consensus disorder prediction 554 589 - -
Lja4g0310 589 SUPERFAMILY TPR-like 413 555 IPR011990 GO:0005515
Lja4g0310 589 MobiDBLite consensus disorder prediction 1 74 - -
Lja4g0310 589 SMART tpr_5 329 362 IPR019734 GO:0005515
Lja4g0310 589 SMART tpr_5 205 238 IPR019734 GO:0005515
Lja4g0310 589 SMART tpr_5 455 488 IPR019734 GO:0005515
Lja4g0310 589 SMART tpr_5 163 196 IPR019734 GO:0005515
Lja4g0310 589 SMART tpr_5 247 280 IPR019734 GO:0005515
Lja4g0310 589 SMART tpr_5 120 153 IPR019734 GO:0005515
Lja4g0310 589 SMART tpr_5 372 405 IPR019734 GO:0005515
Lja4g0310 589 SMART tpr_5 287 320 IPR019734 GO:0005515
Lja4g0310 589 SMART tpr_5 413 446 IPR019734 GO:0005515
Lja4g0310 589 SMART tpr_5 497 530 IPR019734 GO:0005515
Lja4g0310 589 Pfam Tetratricopeptide repeat 457 529 - -
Lja4g0310 589 Pfam Tetratricopeptide repeat 286 360 - -
Lja4g0310 589 Gene3D Tetratricopeptide repeat domain 455 570 IPR011990 GO:0005515
Lja4g0310 589 PANTHER PROTEIN KINESIN LIGHT CHAIN-RELATED 3 6 588 - -
Lja4g0310 589 Coils Coil 385 405 - -
Lja4g0310 589 MobiDBLite consensus disorder prediction 554 583 - -
Lja4g0310 589 Gene3D Tetratricopeptide repeat domain 274 454 IPR011990 GO:0005515
Lja4g0310 589 MobiDBLite consensus disorder prediction 11 35 - -
Lja4g0310 589 Pfam MalT-like TPR region 124 273 IPR041617 -
Lja4g0310 589 Coils Coil 538 558 - -
Lja4g0310 589 PANTHER - 6 588 - -
Lja4g0310 589 Gene3D Tetratricopeptide repeat domain 70 165 IPR011990 GO:0005515
Lja4g0310 589 ProSiteProfiles TPR repeat profile. 287 320 IPR019734 GO:0005515
Lja4g0310 589 Gene3D Tetratricopeptide repeat domain 166 273 IPR011990 GO:0005515
Lja4g0310 589 SUPERFAMILY TPR-like 120 440 IPR011990 GO:0005515
Lja4g0310 589 MobiDBLite consensus disorder prediction 48 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0310 Lja-Chr4 2502591 2505661 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0310 126 332 Glycosyltransferase AT3G04240 24.268 5.35e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0310 - - gmx:100815100 990.334
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0310 4 2502591 2505661 Lja4g0310 4 2502591 2505661 ECH