Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0308 ATGGCGATCCCATCACAATCAACCGCGAGTTTCTCACCTTCCTTCATCTCCACTCGGACCGATTTGACTCACCTCACACGCTTCCCATGCCGAGTCACCATGACTCAGTTACGCGGAACCCGAACTCGCCGACTCGCCGTCTCTTCTCGTCTCAACTCGTCCCTATCCTCGTCCGTCTCGCCGGACAACAACGGCGATGTTCCCTACGAGCTCCACCATGACCTTTCCCCGCAGCGTCGGAGGCGGGAATCGCCGGTGTTCGTGACGCTTCCAGTGAACACCGTCGGTGTAGAGGGCAGGATTTGGAGGCCCAAAGCTATGATGCAGTCCCTCAAGGCGCTCGCCGCCGCGGGTGTGGAAGGCGTGGCTTTGGAGATTTGGTGGGGGTTGGTGGAGAGGAATGAGCCTAGGGTTTATGATTGGAGAGGGTATCGTGAACTGGTCATGATGGCTAGCATGTGTGGTCTCAAGGTTCGTGCTGTTCTTGCGTTTCACCAGCATGGAACAGTCCCTGATGATCCCAATTGGATACCGCTTCCTCTCTGGGTGCTTGATGAGATGAACAAAGATCCAGACTTAGCATATTCTGACAGATTTGGAAGAAGAAATGCTGAGTACATTTCCCTTGGATGTGATATCCTTCCTGTGCTACGTGGACGGTCTCCTATTCAAGCATATGCAGATTTTATGCGGAGTTTCAGGGATACTTTCAGGCCCTCACTTGGTGTTATCATTATAGGAGTACAGATTGGCATGGGTCCTGGTGGTGAACTAAGATATCCTTCATTCTCTTTCCAAAAGCCAAATTTGGCTTGGCCTCATGAACTTGGAGAGTTTCAGTGCTATGATAAGTATATGCTTGCTTCTCTAAACGCTTCTGCAAGAAATATTGGAAAGCGTGAATGGGGAAATGGTGGTCCATTTGGCACTGGAAGTTTGATGCGAAATCCTGAGCATACTGAATTCTTTAAAAATGGGGATGGTTCTTGGAACACACCATATGGTCAATTTTTCCTTGAATGGTACTCAGATATGCTGCTAATGCATGGCGAGAGAATTTGTAGGGAAGCAGAAACTATATTTAGAGGTACTGAAGTCCATATATCAGCAAAAGTGGCTGCTATTCACTGGCACTATGTCACACAATCCCATCCATCAGAGTTAACAGCAGGCTACTATAACACTTCAAACAGGGATGGGTACTTACCCATTGCTCGCATGTTTAGTAAATATGGATTCTCATTGTGCTGCTCTTGTTTTGAAATGCAAGATGAAGTAATGAAGAAGATCAATCCAGATGGTAGCCCTGAAGGTTTTCTTAGACAGCTTTTGCTGACTGCTAGGCTCTGTGACATATCACTCGAAGGTCAAAATTTTTCAACTGATTTGGATGATGATGGGTTTTCCCAGGTGCTAAAGATGTCCACATATTACTCGAGCGGGATTGAGAAGCGTCCCTTTTCGTTCAACTTTGTAAGAATGGGCAGAAATATGTTTGAACCCCGAAATTGGGATCGGTTTACTCGTTTTGTGAGGCAAATGTCTGATAGGAACATTTTTCGAGCCAGATTAAGTTCTGTTGGTCACAAAAGGTTGAAGACCACACAATGGGCTGCAGAGTTAGGACTATTGTACCAGCTCTACCAGCTCTGTTGA 1656 0.4686 MAIPSQSTASFSPSFISTRTDLTHLTRFPCRVTMTQLRGTRTRRLAVSSRLNSSLSSSVSPDNNGDVPYELHHDLSPQRRRRESPVFVTLPVNTVGVEGRIWRPKAMMQSLKALAAAGVEGVALEIWWGLVERNEPRVYDWRGYRELVMMASMCGLKVRAVLAFHQHGTVPDDPNWIPLPLWVLDEMNKDPDLAYSDRFGRRNAEYISLGCDILPVLRGRSPIQAYADFMRSFRDTFRPSLGVIIIGVQIGMGPGGELRYPSFSFQKPNLAWPHELGEFQCYDKYMLASLNASARNIGKREWGNGGPFGTGSLMRNPEHTEFFKNGDGSWNTPYGQFFLEWYSDMLLMHGERICREAETIFRGTEVHISAKVAAIHWHYVTQSHPSELTAGYYNTSNRDGYLPIARMFSKYGFSLCCSCFEMQDEVMKKINPDGSPEGFLRQLLLTARLCDISLEGQNFSTDLDDDGFSQVLKMSTYYSSGIEKRPFSFNFVRMGRNMFEPRNWDRFTRFVRQMSDRNIFRARLSSVGHKRLKTTQWAAELGLLYQLYQLC* 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0308 551 Pfam Glycosyl hydrolase family 14 87 510 IPR001554 GO:0000272|GO:0016161
Lja4g0308 551 PANTHER BETA-AMYLASE 3 536 - -
Lja4g0308 551 SUPERFAMILY (Trans)glycosidases 84 541 IPR017853 -
Lja4g0308 551 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 366 382 IPR001554 GO:0000272|GO:0016161
Lja4g0308 551 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 118 132 IPR001554 GO:0000272|GO:0016161
Lja4g0308 551 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 253 275 IPR001554 GO:0000272|GO:0016161
Lja4g0308 551 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 161 182 IPR001554 GO:0000272|GO:0016161
Lja4g0308 551 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 383 394 IPR001554 GO:0000272|GO:0016161
Lja4g0308 551 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 401 424 IPR001554 GO:0000272|GO:0016161
Lja4g0308 551 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 330 349 IPR001554 GO:0000272|GO:0016161
Lja4g0308 551 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 139 157 IPR001554 GO:0000272|GO:0016161
Lja4g0308 551 Gene3D Glycosidases 76 543 - -
Lja4g0308 551 MobiDBLite consensus disorder prediction 53 80 - -
Lja4g0308 551 PANTHER - 3 536 IPR001554 GO:0000272|GO:0016161
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0308 Lja-Chr4 2493117 2496244 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0308 58 516 Glycoside Hydrolase AT4G17090 48.052 2.28e-151 443
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0308 K01177 - gmx:100805981 891.338
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0308 4 2493117 2496244 Lja4g0308 4 2493117 2496244 ECH