Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0163 ATGGCCTCTTCAACTTCAACTCGTTCCTCTTGCCTCATCGCCTCCTTCTCCTCCTTCACCAACACCGCAAACCGCCACGACCCCTTCTCCTCCTCCTTCAAATTCACCGCTTCACAACAACCTCACTTCCACCGCCGTCGTGGTCACCCTCCCCAATTCCAACGCCACTGGAGATTCACGGTGGCGTCATACAACATACTAGCAGATAGAAATGCTTTTCACCACCGCGATTTGTACCTCAACGTTCCTTACCCTTTCATCAAATGGGATCGCCGGAAAACCGTTATTTGCCATGAACTCTTTGGATGGAACCCTGATATTATCTGTTTACAAGAAGTGGACAAGTATCTTGAACTCTCAAACATTTTGGTCAAAGCAGGATACACTGGATACTATAAGAGGCGCACTGGAGATTCAGTTGATGGTTGTGCCATGTTTTGGAAAGCTGATAAATTCAGGTTGTTAGATGGAGAGAGCATTCAATTTAAGGACATTGGTCTTCGTGATAATGTTGCTCAACTTCTAGTTTTTGAGATGTGTGAATCTGACTCGAGAAGATTGTTAGTTGGTAACATCCATGTACTTTATAATCCAAACAGGGGAGACGTTAAATTAGGTCAAATTCGGTTTCTCTTGTCAAGAGCACATACCCTCTCAGAGAAATGGGGTAATGCCCCTGTTGTCCTAGCTGGTGATTTTAATTGTACTCCTCAGAGTGGAATATACAAGTTCTTGTCATCATCGGAGCTTAATATCATGCTATATGACAGAAAGGAGTTATCTGGACAGAAACGATGTCGTCCTGCTCAAGTTTTAGATGAGAAAAAAGATACAGTTGGTCCGCTTAGCTTACCAGATGGGTTGTTGGATTGCTGGACAGATGAAGAGGTAAAAATTGCTACTGGTGATTCTGAGCGTCATTTGGCTATGCATCCATTAAAGCTGAAAAGTTCATACGCCACAGTGAATGGTTCAACTGGTACACGGGGACTCAATGGTGAACCCGTGGCAACTTCCTATCACTCAAAGTTTCTTGGTTCTGTAGATTACTTATGGTACTCTGATGGTATTGTACCTACAAAAGTTCTTGATACCGTTCCAATGAACGATCTTCTGAGGGCAGGTGGTCTCCCATGCAAGAAAGTGGGAAGCGACCATTTGGCTTTGGTTTCTGAATTTTCCTTCTCAGTTACCCATAATAAATCAACTGACACAGCATCCTCTAGAGTAGATATTGAAGAGAATGGCGATCTGCAGTCTTAA 1263 0.4347 MASSTSTRSSCLIASFSSFTNTANRHDPFSSSFKFTASQQPHFHRRRGHPPQFQRHWRFTVASYNILADRNAFHHRDLYLNVPYPFIKWDRRKTVICHELFGWNPDIICLQEVDKYLELSNILVKAGYTGYYKRRTGDSVDGCAMFWKADKFRLLDGESIQFKDIGLRDNVAQLLVFEMCESDSRRLLVGNIHVLYNPNRGDVKLGQIRFLLSRAHTLSEKWGNAPVVLAGDFNCTPQSGIYKFLSSSELNIMLYDRKELSGQKRCRPAQVLDEKKDTVGPLSLPDGLLDCWTDEEVKIATGDSERHLAMHPLKLKSSYATVNGSTGTRGLNGEPVATSYHSKFLGSVDYLWYSDGIVPTKVLDTVPMNDLLRAGGLPCKKVGSDHLALVSEFSFSVTHNKSTDTASSRVDIEENGDLQS* 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0163 420 Gene3D Endonuclease/exonuclease/phosphatase 36 410 IPR036691 -
Lja4g0163 420 PANTHER CARBON CATABOLITE REPRESSOR PROTEIN 4 HOMOLOG 3 29 397 - -
Lja4g0163 420 PANTHER CARBON CATABOLITE REPRESSOR PROTEIN 4 29 397 - -
Lja4g0163 420 SUPERFAMILY DNase I-like 47 398 IPR036691 -
Lja4g0163 420 Pfam Endonuclease/Exonuclease/phosphatase family 62 386 IPR005135 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0163 Lja-Chr4 1262491 1270946 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0163 59 247 EF-hand Containing Proteins AT5G54130 29.902 5.70e-11 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0163 - - gmx:100779393 624.394
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0163 4 1262491 1270946 Lja4g0163 4 1262491 1270946 ECH