Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0158 ATGAACGTCGCTACTTGTTCGGTATCATCATTCAACTTCCCAAGGTGGCGCCGATTCTCAAAACCCCTCATGTATCTCTCTTCTTCCTCATCCTGCGTCATGTCTCTCATGTCTCCTCAGAATTCCTCAGCTTCCATAACCACCGCTGCATCACCCACCATACAGCCCAAGAAGAAGGAACCTTGGTTAATCGTTGGCCTCGGAAACCCCGGGAAGAAGTACGCTTCTACTCGCCACAATGTGGGATTTGAGATGGTTGATACTATTGCTGAAGCTGAAGGGATATCTATCAACAGTGTTTCTTTCAAGGCCCTGTTTGGAAAAGGTGTTATTGGTGATGTACCGGTTATACTTGCAAAACCACAGACTTATATGAATTTAAGCGGTGAATCTGTTGGGGCCATAGTTTCATATTACAAGATTCCAGTGAAGCAAGTACTCGTGATCTTTGATGACATGGATTTGCCTTTTGCTAAATTGCGGCTGCTACCAAAGGGTGGACATGGAGGTCACAATGGAATGAAGAGTGTTATTAATCACTTTAAAGGGAATCTTGGTTTTCCCCGTTTAAGAATTGGCATTGGACGGCCTCCTGGCAAAATGGATCCAGTGGCATTTGTTCTTCGCTCATTCACTAAACAGGAAAGAGAAGAGTTGGATTTTACATTACAACATGGATTAGAAGCTGTGCGGATTCTTTTGCTGGAGGGGTTTGATAAAAGTGCAACATTTGTAAATAGTTCTAAGAAGATGGAGCAAATAGGTTGA 768 0.4336 MNVATCSVSSFNFPRWRRFSKPLMYLSSSSSCVMSLMSPQNSSASITTAASPTIQPKKKEPWLIVGLGNPGKKYASTRHNVGFEMVDTIAEAEGISINSVSFKALFGKGVIGDVPVILAKPQTYMNLSGESVGAIVSYYKIPVKQVLVIFDDMDLPFAKLRLLPKGGHGGHNGMKSVINHFKGNLGFPRLRIGIGRPPGKMDPVAFVLRSFTKQEREELDFTLQHGLEAVRILLLEGFDKSATFVNSSKKMEQIG* 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0158 255 PANTHER PEPTIDYL-TRNA HYDROLASE 21 249 IPR001328 GO:0004045
Lja4g0158 255 TIGRFAM pth: aminoacyl-tRNA hydrolase 63 242 IPR001328 GO:0004045
Lja4g0158 255 Hamap Peptidyl-tRNA hydrolase [pth]. 61 239 IPR001328 GO:0004045
Lja4g0158 255 SUPERFAMILY Peptidyl-tRNA hydrolase-like 61 246 IPR036416 GO:0004045
Lja4g0158 255 ProSitePatterns Peptidyl-tRNA hydrolase signature 1. 74 87 IPR018171 GO:0004045
Lja4g0158 255 PANTHER PEPTIDYL-TRNA HYDROLASE CHLOROPLASTIC 21 249 - -
Lja4g0158 255 Pfam Peptidyl-tRNA hydrolase 63 241 IPR001328 GO:0004045
Lja4g0158 255 ProSitePatterns Peptidyl-tRNA hydrolase signature 2. 167 177 IPR018171 GO:0004045
Lja4g0158 255 Gene3D - 48 248 IPR036416 GO:0004045
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0158 Lja-Chr4 1219118 1222809 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0158 K01056 - gmx:100526866 381.333
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0158 4 1219118 1222809 Lja4g0158 4 1219118 1222809 ECH