Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0153 ATGTCTCGAATCTTCGAGTACTTCGTCGTGTGCGGGATCGGACCGGAGATTCGAACCGTCGATGGAAGCAAAGGCTACCATGGCCCTGCTTGCATGTATCTTCCTTCTCTTCTCGATCAGTATCCTCCTTCTAATCATTCTCTCTACCCTCCTCCACCTCCTCAGCTTCCCACATGTGTTCTACCGGCTGGTGTTGAGTTCTATTCCTCAGGATTTGATTCCAGTGATCCTTCCACGTTTCCGCGGAGCTATCCGATTGTTTTGACCGAGGGTGACGGTTCAAAAATTTATGTTAGTTGCATTTCTTTCCGGGATCCGGTGTGTGAGGATATTGCGGAGGCCTACCGGATACAGGCAAATTCATATGCTGACAAGTGCATCTGTCTAGTTTCACGTTCACCAAGTTTTCGTGTAATAAGGACTGCCCTAGAGGAACTATTTGCACTGTGTTTTTCCCCAAATGGAAGCAGCAAGCCGCTGTGGGATGTTATAGCACATGTGGTGTCCAGTGTGCCTTTGCCAACTCCTGGAAAAGAGCGGGTTCTGTTTGCTATTGAGAACTGTCTGCTACCTGTCGAGGCTCCACCAAACCATGGACTTCCCTATGTTGATATATCATTCCAGCCTTTGGTGCAGTGTTTGGATGTTGAGAACTTAATAATACTTTTTACAGCAGTGTTGATTGAGAGGAGGATTTTACTTCGGGCTAACAAGTATTCACTCCTAACTCTTGTATCAGAGGCCATTTGTCACTTAATCTACCCATTCCGATGGCAGCATGTATACATTCCGTTGCTGTTTTTCAGTGGAGTAGATTATATCGATGCTCCCACACCATATATGATGGGGCTCCATTCGGGTGTTGATACCTCTACTCTAGCAATGGATGGTGTGGTTATTGTGGACCTTGAGTATAATCGTATCACTACATCAGAGGAAATTCCACCTATTCCTGAGCCAGAACTCAGCTTTTTGCGTGGTGATATAATGAAGTTATTATATCCCAATGTGATTGGAATTGATGAAATGAAGGCTGGAATTTACAATGTATCTGAGCATTATCCCAAATTTGGGGCTAAGCAATGGGGAGAGGATCACGACCTTCAGTTAAGGATGATATTCCTGAAGTTCTTTGCAACATTTTTAAGTGGCTATCGCAATTTCCTAGAAAATAGTGCTGCTCATGTCTTCAACACTCAAGCTTTTTTGAAGAAGCGGTCTCGATCTAGTAACCAACCACCAGAGCCCATGATAGTTCAGTTCCTTGAATCTCATGGTTTCTTGGATTATTTGGAGAGAGCGGCAGGTTCTGATGAAAACAACAATAATCTACTTGATAAGCTACAAGATGCAATTGGAAGGGATCAAAACCCTATGTCAATTCTTCCTTCATCTTTGGTAGAGCCTGAGATTTTAACAGTATCAGATTCTGATGTTGGAATATCAGGATCTGGTGCCAAGTACACCTATGATAGATTTCCATTAAACATCAGAACAGAAGAGCAAGAAGAAAAGAGGAAGCAGATTCTTGCAGCAATTAGTAATGCCTTTGAGTACTCAGGAAGACATACTCCAAGTAAGGATCCTTTAGCAGATAGCCTTAGTCCACTTGAGAGAGCTGCTGAAAGGGATCTTATGGTGCTGGATATTAAGGTTAAGCTGCAGGGCTTATGGCTGCGGCTTCTTAAATTGGGAGCAACAGATGATCCTCTCTCATCCTTTGAATATGGAACAATACTTGCTTTAATTGAATCTGATGCGGAGGGGATTGGCGGGAGCGGATTTGTTGAATGTATAAGCGAGCATATACATTCTGGTTGGCATTGTCAGCTTACCGAGGAACAGTTCATTGCAGTGAAGGAATTGCTCAAAACAGCTATCAATCGCGCAACATCACGGAATGACTTGCTGACCATTAGAGATGCACTTGAAGTTTCTTCTGATATGTATAAGAAAGACAACAATAATGTGCCAGACTATGTTCAACGTCATCTGATCTCTTTATCTATTTGGGAGGAGTTACGATTTTGGGAAGGATATTTTGACTATTTAATGGAGCAATCTTCAAACAAGTCAGCCAACTATGCATCTTTGGTGACAGCACAGCTTGTTATATTGGCATCACACATGGCTGGGCTAGGACTTCCTGATAATGATGCTTGGTACATGATTGAAACAATTGCAGAGAGGAACAACATTGGATCTAAACAATTTATAAAAATCAGAGGGTTCTTGTCTCATATCCAGCAACTACGTAATGGATATTGGGGAGTGACCTCAATGAAGGCACAGTCTATGTTATCACTTGCATTGCCGTCCCCACATTCAAAAAATACCAAAGATGAGGACCAGCAACCAACCGAGGCAACTGGTGTTGGTAGAAACTGGGTGCAAAGTATGTTCACCCGAAATACAACATCTAGATCCAGCTCATTTAGTCGCGTTCGTAGATGGACGTCTGACGGAGGAACCAATGAGAATGGGACTCCTCGTAAACTAGATTTATCAACTGGTGGTCAGAAGAAGCTTCAAACCAATATTCGCATACTTAGGGGTCACAATGGTGCCATTACTGCTCTCCATTGTGTTACAAAAAGAGAAGTTTGGGATTTGGTGGGTGACCGTGAAGATGCTGGTTTCTTTATTAGTGGAAGCACAGACTGCTCCGTTAAGATATGGGATCCTAGTCTTCGTGGTTCTGAACTCAGGGCAACTTTAAAAGGGCATACTAGAACTATCCGCGCCATAAGCTCAGATAGAGGGAAGGTGGTGTCAGGATCTGATGATCAGTCTGTTTTGGTGTGGGATAAGCAAACAACTCAACTTTTAGAAGAGCTTAAAGGCCATGATGGACCGGTCAGCTGTGTGCGCATGCTCTCAGGTGAACGTGTGCTAACTGCATCCCATGATGGCACTGTGAAGATGTGGGATGTAAGAACTGATAGATGTGTTGCAACTGTTGGTCGTTGCTCTAGTGCTGTTTTATGCATGGAATATGATGACAATGTGGGAGTCTTGGCTGCTGCTGGAAGAGACGTGGTTGCTAACATCTGGGACATCCGTGCTAGTAGGCAGATGCATAAACTATCAGGGCATACACAATGGATAAGGTCTCTCAGAGTGGTTGGTGACACTGTGATTACTGGCAGTGATGATTGGACAGCAAGAATATGGTCTGTTTCCCGAGGGACATGTGATGCTGTCCTAGCATGCCATGCAGGGCCAATATTATGTGTTGAATATTCCTCTTTAGACAAAGGAATAATAACAGGTTCAAGCGATGGCCTGGTACGTTTCTGGGAAAATGATGATGGAGGTATAAGATGTGCAAAAAATGTAACAATTCACAATGCTGCCATATTATCTATCAATGCTGGGGAGCATTGGCTAGGTATTGGAGCAGCTGATAATTCTTCGTCTCTCTTTCATCGGCCCCAAGAGAGACTAGGTGGTTTTTCTGGAACTGGGTCCAAAATGGCTGGTTGGCAACTTTACAGAACACCACAAAAGACAGTTGCAATGGTAAGATGTATTGCTTCTGACCTGGAGAGGAAAAGGATATGCAGCGGTGGTCGTAATGGACTTCTAAGGCTGTGGGATGCAACCATTAATATTTGA 3618 0.4359 MSRIFEYFVVCGIGPEIRTVDGSKGYHGPACMYLPSLLDQYPPSNHSLYPPPPPQLPTCVLPAGVEFYSSGFDSSDPSTFPRSYPIVLTEGDGSKIYVSCISFRDPVCEDIAEAYRIQANSYADKCICLVSRSPSFRVIRTALEELFALCFSPNGSSKPLWDVIAHVVSSVPLPTPGKERVLFAIENCLLPVEAPPNHGLPYVDISFQPLVQCLDVENLIILFTAVLIERRILLRANKYSLLTLVSEAICHLIYPFRWQHVYIPLLFFSGVDYIDAPTPYMMGLHSGVDTSTLAMDGVVIVDLEYNRITTSEEIPPIPEPELSFLRGDIMKLLYPNVIGIDEMKAGIYNVSEHYPKFGAKQWGEDHDLQLRMIFLKFFATFLSGYRNFLENSAAHVFNTQAFLKKRSRSSNQPPEPMIVQFLESHGFLDYLERAAGSDENNNNLLDKLQDAIGRDQNPMSILPSSLVEPEILTVSDSDVGISGSGAKYTYDRFPLNIRTEEQEEKRKQILAAISNAFEYSGRHTPSKDPLADSLSPLERAAERDLMVLDIKVKLQGLWLRLLKLGATDDPLSSFEYGTILALIESDAEGIGGSGFVECISEHIHSGWHCQLTEEQFIAVKELLKTAINRATSRNDLLTIRDALEVSSDMYKKDNNNVPDYVQRHLISLSIWEELRFWEGYFDYLMEQSSNKSANYASLVTAQLVILASHMAGLGLPDNDAWYMIETIAERNNIGSKQFIKIRGFLSHIQQLRNGYWGVTSMKAQSMLSLALPSPHSKNTKDEDQQPTEATGVGRNWVQSMFTRNTTSRSSSFSRVRRWTSDGGTNENGTPRKLDLSTGGQKKLQTNIRILRGHNGAITALHCVTKREVWDLVGDREDAGFFISGSTDCSVKIWDPSLRGSELRATLKGHTRTIRAISSDRGKVVSGSDDQSVLVWDKQTTQLLEELKGHDGPVSCVRMLSGERVLTASHDGTVKMWDVRTDRCVATVGRCSSAVLCMEYDDNVGVLAAAGRDVVANIWDIRASRQMHKLSGHTQWIRSLRVVGDTVITGSDDWTARIWSVSRGTCDAVLACHAGPILCVEYSSLDKGIITGSSDGLVRFWENDDGGIRCAKNVTIHNAAILSINAGEHWLGIGAADNSSSLFHRPQERLGGFSGTGSKMAGWQLYRTPQKTVAMVRCIASDLERKRICSGGRNGLLRLWDATINI* 1206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0153 1205 Gene3D - 1029 1204 IPR015943 GO:0005515
Lja4g0153 1205 ProSitePatterns Trp-Asp (WD) repeats signature. 1187 1201 IPR019775 -
Lja4g0153 1205 ProSiteProfiles Tripartite DENN domain profile. 18 442 IPR037516 -
Lja4g0153 1205 Pfam uDENN domain 35 103 IPR005113 -
Lja4g0153 1205 MobiDBLite consensus disorder prediction 804 838 - -
Lja4g0153 1205 ProSiteProfiles Trp-Asp (WD) repeats profile. 906 945 IPR001680 GO:0005515
Lja4g0153 1205 MobiDBLite consensus disorder prediction 771 792 - -
Lja4g0153 1205 SMART uDENN_cls 1 104 IPR005113 -
Lja4g0153 1205 PRINTS G protein beta WD-40 repeat signature 923 937 IPR020472 -
Lja4g0153 1205 PRINTS G protein beta WD-40 repeat signature 1046 1060 IPR020472 -
Lja4g0153 1205 PRINTS G protein beta WD-40 repeat signature 964 978 IPR020472 -
Lja4g0153 1205 PANTHER C-MYC PROMOTER BINDING PROTEIN 3 1205 - -
Lja4g0153 1205 Pfam DENN (AEX-3) domain 123 304 IPR001194 -
Lja4g0153 1205 SMART WD40_4 939 977 IPR001680 GO:0005515
Lja4g0153 1205 SMART WD40_4 1062 1101 IPR001680 GO:0005515
Lja4g0153 1205 SMART WD40_4 843 894 IPR001680 GO:0005515
Lja4g0153 1205 SMART WD40_4 1161 1200 IPR001680 GO:0005515
Lja4g0153 1205 SMART WD40_4 899 936 IPR001680 GO:0005515
Lja4g0153 1205 SMART WD40_4 980 1019 IPR001680 GO:0005515
Lja4g0153 1205 SMART WD40_4 1022 1059 IPR001680 GO:0005515
Lja4g0153 1205 CDD WD40 846 1138 - -
Lja4g0153 1205 SMART DENN_cls 122 306 IPR001194 -
Lja4g0153 1205 Gene3D - 1 176 - -
Lja4g0153 1205 ProSiteProfiles Trp-Asp (WD) repeats profile. 1069 1101 IPR001680 GO:0005515
Lja4g0153 1205 ProSiteProfiles Trp-Asp (WD) repeats profile. 946 986 IPR001680 GO:0005515
Lja4g0153 1205 ProSitePatterns Trp-Asp (WD) repeats signature. 964 978 IPR019775 -
Lja4g0153 1205 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1069 1101 - -
Lja4g0153 1205 ProSiteProfiles Trp-Asp (WD) repeats profile. 1029 1068 IPR001680 GO:0005515
Lja4g0153 1205 SUPERFAMILY WD40 repeat-like 847 1201 IPR036322 GO:0005515
Lja4g0153 1205 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 906 936 - -
Lja4g0153 1205 ProSiteProfiles Trp-Asp (WD) repeats profile. 876 894 IPR001680 GO:0005515
Lja4g0153 1205 PANTHER DENN DOMAIN-CONTAINING PROTEIN 3 3 1205 - -
Lja4g0153 1205 Gene3D - 809 1028 IPR015943 GO:0005515
Lja4g0153 1205 SMART dDENN_cls 366 434 IPR005112 -
Lja4g0153 1205 Gene3D - 202 387 IPR043153 -
Lja4g0153 1205 Pfam WD domain, G-beta repeat 941 977 IPR001680 GO:0005515
Lja4g0153 1205 Pfam WD domain, G-beta repeat 1025 1059 IPR001680 GO:0005515
Lja4g0153 1205 Pfam WD domain, G-beta repeat 904 936 IPR001680 GO:0005515
Lja4g0153 1205 Pfam WD domain, G-beta repeat 1064 1100 IPR001680 GO:0005515
Lja4g0153 1205 Pfam WD domain, G-beta repeat 845 894 IPR001680 GO:0005515
Lja4g0153 1205 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 946 980 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0153 846 1113 Acyl Lipid Metabolism Gene Families AT3G18860 26.316 1.99e-13 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0153 - - gmx:100818305 2207.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0153 4 1169723 1193367 Lja4g0153 4 1169723 1193367 ECH