Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0144 ATGGCCGGGAAACAAGTCAGCGGCGGCGGCGGCGGCGGCGGTGAGGGGTTAACGGCGAACCTCGCCGGAATGTCAAAGAATCAGCTCTACGATATCATGTCTCAGATGAAGAATCTCATCGAACAGAATCAACAACAAGCGAGGCAGATCCTCATCCAGAACCCTATGTTAACCAAAGCGCTTTTCCAGGCACAAATTATGCTTGGAATGGTGCAATCACCTCAAGTGGTTCCAAAAGTTCAGCCGATGGTTCCACAGAACAATCAGTCAGTACAGTCAGCACAACCGCCTAAAGTTCAGCCTGTTCCATTATTGCCTGGGCAAGGTGGTGCACAGGATCAAGCTGGTGTATCTCAAACCCAAATTCCTCTGAGGAAACACCAAAACCAACCTTCAGTTCCAGTTTCTTATGCCGCTACTCCTGCAATGAGTCATCAATCTCCGCCCATGGCTGGACATTCTTTGCAGATGCCACAACAGCCTAAAGGACATCTAGCACCCCAAGCAGCTCCGGCTTCTCTTCCACAATCTTCACAACTTCCAAACATTCCTCCACCTTCTCTTCATTCATCATCACAGCCACATCATCCAACTCAAATGCAAACTGCATCAAGTCAGTTGCAGCAACCATTGCAGGCACCTGGATTTCCACATATGCCTTTGCAACCACCTCTGCCACCACAGCTCAGACCACCTTCAGCGTCGTCCTTCCATCCCCAGTATCCCCCACAAATGGGGTCCAATTTAGGTTTTCAACACGCTGGTGCTTCTCACAATCTTCAGCAATCTATGTTTCATCCAGGTGCAAAACCTCCTGCTAGTGTTGGATCCGCGTTCACCCAAGGGCAACCTCCACTTCCAAGTCAGCAATCATCTCAGTCACCTTATCCGGTTGGAAATATGCCTTTTGGGCATGATTTTGGCAATCAAGGTGGAAATGCAATGCAAGTTGATAGAGTGTCTAGGATGCATGGTGGTCACTCAGAAAACTTAGCACAGCTCTCTGGTCCTCTGGGGCCACCATCTTTAGTTTCTGGTCAGATGGGTGCTGCTAATCAGCCTCTTCGGCCTCCTGGGTTGACACCAGATATGGAGAAGGCACTGCTTCAGCAGGTCATGAGTCTCACGCCCGAGCAGATAAATCACCTGCCCCCAGAACAAAGAAATCAAGTGCTGCAGCTGCAACAGATGTTGCGTCAATGA 1203 0.4971 MAGKQVSGGGGGGGEGLTANLAGMSKNQLYDIMSQMKNLIEQNQQQARQILIQNPMLTKALFQAQIMLGMVQSPQVVPKVQPMVPQNNQSVQSAQPPKVQPVPLLPGQGGAQDQAGVSQTQIPLRKHQNQPSVPVSYAATPAMSHQSPPMAGHSLQMPQQPKGHLAPQAAPASLPQSSQLPNIPPPSLHSSSQPHHPTQMQTASSQLQQPLQAPGFPHMPLQPPLPPQLRPPSASSFHPQYPPQMGSNLGFQHAGASHNLQQSMFHPGAKPPASVGSAFTQGQPPLPSQQSSQSPYPVGNMPFGHDFGNQGGNAMQVDRVSRMHGGHSENLAQLSGPLGPPSLVSGQMGAANQPLRPPGLTPDMEKALLQQVMSLTPEQINHLPPEQRNQVLQLQQMLRQ* 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0144 400 Pfam Transcription termination and cleavage factor C-terminal 366 400 IPR026896 GO:0031124
Lja4g0144 400 Gene3D - 12 79 - -
Lja4g0144 400 MobiDBLite consensus disorder prediction 112 154 - -
Lja4g0144 400 MobiDBLite consensus disorder prediction 87 313 - -
Lja4g0144 400 MobiDBLite consensus disorder prediction 192 212 - -
Lja4g0144 400 MobiDBLite consensus disorder prediction 276 298 - -
Lja4g0144 400 MobiDBLite consensus disorder prediction 216 238 - -
Lja4g0144 400 MobiDBLite consensus disorder prediction 239 264 - -
Lja4g0144 400 MobiDBLite consensus disorder prediction 327 356 - -
Lja4g0144 400 Pfam Hinge domain of cleavage stimulation factor subunit 2 18 76 IPR025742 -
Lja4g0144 400 PANTHER HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN 1 400 - -
Lja4g0144 400 Gene3D - 361 400 IPR038192 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0144 Lja-Chr4 1092238 1095780 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0144 - - lja:Lj4g3v3099310.1 700.664
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0144 4 1092238 1095780 Lja4g0144 4 1092238 1095780 ECH