Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0115 ATGGCTGTTCTGCTTCTAATGCTTTTCTTCATGCTACCACTCTCTATTTCTATTTCTCATGCTGCTGGAGATGCTTTCATTGGTGTCAACATTGGTTCAGATGTATCTAACATGCCAAGTCCAACAGAGATTGTGACCCTTCTTAAAGCTCAAAGCATCCAACATGTCAGACTCTATGACGCCGACCGAGCCTTGCTTATTGCTCTCGCTAACACTGGAATACGCGTAACTGTTTCTGTTCCCAACGACCAGCTTCTCGGCATTGGTCAGTCCAATGACACTGCCGCAAATTGGGTTTCTCGAAACGTCATAGCTCATGTTCCTGCTACCAACATTACTACCATAGCTGTCGGATCTGAGGTTCTAACTATCATCCCAAATGCAGCCCCCATTCTAGTCTCTGCCATGAATTTCATTCATTCTGCTCTTGTGGCTGCAAAGTTGGATAGCCAAATTAAAGTCTCGACTCCACACCCTTCTTCTATCATCCTTGACTCGTTCCCACCTTCGCAAGCATTTTTCAACCGAACTTGGAATCCGGTCATGGTTCCTTTGCTTAAATTTCTTCAAACAACAGGTTCATGTCTTATGCTCAATGTATACCCGTATTACGATTACCAGCTATCCAACGATGCAATCCCGCTCGATTATGCTTTATTCCGCCCCCTACCGCCCAATAAGGAAGCTGTTGATGCCAACACTCTCCTGCATTACACTAATGTTTTTGATGCAATTGTTGATGCTGCTTATTTTGCAATGTCTGACTTGAACTTCACCAATATCCCTGTTCTGGTCACTGAATCAGGATGGCCCTCAAAAGGCGACTCATCTGAGCCGGATGCAACCATTGATAATGCTAACACTTACAACAGTAACTTGATCAGACATGTTCTTAACAATACAGGAACTCCGAAACACCCGGGAATTGCAGTTAGTACATACATTTATGAGCTTTACAATGAAGACTTGAGATCAGGTCCAGTCTCAGAAAAGAACTGGGGGCTATTTTTTGCTAATGGAGGACCAGTGTATACCTTACACTTAACTGGTGTTGGTACTATATTTGCAAATGATACGACAAACCAAACATTTTGTATCTCAAAGCGTAATGCAGATCCTAAGATGCTGCAGGCAGCACTTGATTGGGCTTGTGGACCAGGGAAGGTTGATTGTTCCCCTTTGCTGCAGGGTCAACCATGTCATGAACCAGATAATGTAGTTGCGCATGCTACATACGCTTTCAATGCTTATTATCAGAAGATGGCTAAGTCTCCTGGGACCTGCGATTTCAAAGGGGTTGCCGCTATCACTTCCACAGACCCAAGTCATGGTTCTTGTATATTTCCAGGAAGTCATGGTAAAAATGGCACCAGCATAAATGGCACTTCACTTGCCCCATCTAATTCTACAAGTTCAGGCTGTTTATCGCAATACTACTACAGTAGGGGATCTTTCACAAGCTCTGTGATTCTAGTTGTTTTACTTTTCAGTGCAGCTGTCATATAA 1506 0.4349 MAVLLLMLFFMLPLSISISHAAGDAFIGVNIGSDVSNMPSPTEIVTLLKAQSIQHVRLYDADRALLIALANTGIRVTVSVPNDQLLGIGQSNDTAANWVSRNVIAHVPATNITTIAVGSEVLTIIPNAAPILVSAMNFIHSALVAAKLDSQIKVSTPHPSSIILDSFPPSQAFFNRTWNPVMVPLLKFLQTTGSCLMLNVYPYYDYQLSNDAIPLDYALFRPLPPNKEAVDANTLLHYTNVFDAIVDAAYFAMSDLNFTNIPVLVTESGWPSKGDSSEPDATIDNANTYNSNLIRHVLNNTGTPKHPGIAVSTYIYELYNEDLRSGPVSEKNWGLFFANGGPVYTLHLTGVGTIFANDTTNQTFCISKRNADPKMLQAALDWACGPGKVDCSPLLQGQPCHEPDNVVAHATYAFNAYYQKMAKSPGTCDFKGVAAITSTDPSHGSCIFPGSHGKNGTSINGTSLAPSNSTSSGCLSQYYYSRGSFTSSVILVVLLFSAAVI* 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0115 501 SUPERFAMILY (Trans)glycosidases 27 347 IPR017853 -
Lja4g0115 501 ProSitePatterns Glycosyl hydrolases family 17 signature. 261 274 IPR000490 GO:0004553|GO:0005975
Lja4g0115 501 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE-LIKE PROTEIN 8 490 - -
Lja4g0115 501 Pfam Glycosyl hydrolases family 17 27 347 IPR000490 GO:0004553|GO:0005975
Lja4g0115 501 Gene3D Glycosidases 26 352 - -
Lja4g0115 501 Gene3D - 357 456 - -
Lja4g0115 501 SMART X8_cls 363 448 IPR012946 -
Lja4g0115 501 Pfam X8 domain 364 434 IPR012946 -
Lja4g0115 501 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 8 490 IPR044965 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0115 Lja-Chr4 890006 894408 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0115 25 501 Glycoside Hydrolase AT1G66250 68.685 0.0 688
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0115 K19891 - gmx:100820015 892.108
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0115 4 890006 894408 Lja4g0115 4 890006 894408 ECH