Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0060 ATGATGTCCTCTTCCACTTCCAAGATGCATCATCTTGATCTTCAGCTTCAAACTACCTTAATGGCTACTACCACTTTTTCCCACCTCACCCAGGCAAGTCTCTGTTTCTTTCCCCCTTACAATTTTGTCCCCTCTCTTCTGAACTCTCTTTTGCACTATAACAGAAGGAGCCTTCAACTCTCATGCAGCAGCTTGTCTTCTAACGACAATGACCACAACCTCCGAGTAGTCTTTGCGGGCGGCGGTACTGGCAGCAATGTGTACCCCGCGGTGGCCATCGCGGAAGAGCTCAAAACATCAAACCCCGCGTGCGAGTTTCTCTTTGTTGGCAGCCCCAACAGCATTGAGAGCACTGCAGTCACCTCTGCAGGGTACAACTTTGCCCCTGTTCTCTCACTCTGTTTCTCCCCTGTTTCATCCATCACTCTGTTTCAACTCTGTTCTTCCCCTTGCCGTTTTGTAAAATCCCTGATCCAATGCTCACGCCACCTCCGAGATTTCAAACCTCACATTGTTGTTGGAACCGGTGGCTATGTCTCTTTCCCCGTTTGCCTCGCCGCGAAAATCAACAACATCATGGTTGTGATTCATGAACCAAACTCTGCCCCTGGTTTCGTAAACTCTGTTCTTGCCCTGTTTGCTCATAAAATCTTTGTTGCTTTCAACTCAACCGTTGATAGCTTCCCCAGAAACAAGTGCGTGGTGTGTGGAAACCCGGTGAGGTTGTCTCTCAGAAACCCGGTTTCGAAGGCGGCTGCAAGGTCTCATTTTTTCCCTGGTTATGGGGAATCGAGTGATTCCGAGAAGGACAAGGTTTTGTTAGTTCTTGGTGGTTCTTTAGGTGCTAATGCTGTAAACATAGCTATGCTGAATTTGTATCATCAGATGCTGAGACAGAACAATGGCTTGTACCTTATATGGCAAACTGGGGTTGAAACGTATGATGAAATGGACAGCCTAGTTAAAAATCATCCACGCTTGTACTTGACACCGTTCATGCACTGTATGGATTTGGCATATGCTGCTGCAGACTTGATTGTATCTAGAGCGGGTGCAATGACTTGCTATGAAATATTGGCAACTGGGAAACCTTCTATCCTGATACCATCGCCACATTTATCTGAGGGAAATCAATTCAGAAATGCTTCCTTGCTGGCAGACTTAGCTGGTGTGACAGTGATAACTGAGGAGGATCTCGACTCATGCACACTAGCCATTGCAATTGAAGGGATTTTCAGGGACAAGAAGAAGATGGAAGAAATGTCTGAGAGGGCTCTCAAAGCGGCGAACCCCAAAGCTTCAGCTGAGATTGCAAAACACATATTTTCTCTTGTTAGACAATCAATAAAAAGTGGAGAAATTGCTAAAGAGTAG 1374 0.4614 MMSSSTSKMHHLDLQLQTTLMATTTFSHLTQASLCFFPPYNFVPSLLNSLLHYNRRSLQLSCSSLSSNDNDHNLRVVFAGGGTGSNVYPAVAIAEELKTSNPACEFLFVGSPNSIESTAVTSAGYNFAPVLSLCFSPVSSITLFQLCSSPCRFVKSLIQCSRHLRDFKPHIVVGTGGYVSFPVCLAAKINNIMVVIHEPNSAPGFVNSVLALFAHKIFVAFNSTVDSFPRNKCVVCGNPVRLSLRNPVSKAAARSHFFPGYGESSDSEKDKVLLVLGGSLGANAVNIAMLNLYHQMLRQNNGLYLIWQTGVETYDEMDSLVKNHPRLYLTPFMHCMDLAYAAADLIVSRAGAMTCYEILATGKPSILIPSPHLSEGNQFRNASLLADLAGVTVITEEDLDSCTLAIAIEGIFRDKKKMEEMSERALKAANPKASAEIAKHIFSLVRQSIKSGEIAKE* 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0060 457 Gene3D Glycogen Phosphorylase B; 77 435 - -
Lja4g0060 457 Gene3D Glycogen Phosphorylase B; 240 429 - -
Lja4g0060 457 Hamap UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [murG]. 76 445 IPR006009 GO:0050511
Lja4g0060 457 PANTHER UDP-N-ACETYLGLUCOSAMINE--N-ACETYLMURAMYL-(PENTAPEPTIDE) PYROPHOSPHORYL-UNDECAPRENOL N-ACETYLGLUCOSAMINE TRANSFERASE 1 74 444 - -
Lja4g0060 457 Pfam Glycosyltransferase family 28 C-terminal domain 272 430 IPR007235 GO:0016758
Lja4g0060 457 CDD GT28_MurG 75 440 - -
Lja4g0060 457 PANTHER GLYCOSYLTRANSFERASE 74 444 - -
Lja4g0060 457 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 75 446 - -
Lja4g0060 457 Pfam Glycosyltransferase family 28 N-terminal domain 76 218 IPR004276 GO:0005975|GO:0016758|GO:0030259
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0060 34 450 Glycosyltransferase AT1G73740 48.832 1.92e-129 380
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0060 K02563 - gmx:100808262 556.214
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0060 4 487288 491526 Lja4g0060 4 487288 491526 ECH