Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0052 ATGGCGGCAATTGCAGCTCCTCACCGATCCTCCAAGACGGAATCCTATGTCGACAACAAGCGCAAGGAAGACATCCGTCATGCCAACATCGTCGCCGCGCGCTCCGTCGCCAACGCCGTCCGCACCAGTCTCGGTCCCAAAGGCATGGACAAGATGATTTCCACCTCCTCCGACGAGGTTATCATCACCAACGACGGTGCCACCATCCTCAACAAGATGCAGGTCCTCCAACCCGCCGCCAAGATGCTCGTCGAGCTTTCCAAGTCTCAGGACTCCGCAGCCGGCGACGGAACCACCACCGTCGTCGTTATCGCTGGCGCACTCCTCGAGCAGTGCCTCCTCCTCCTCTCCCGCGGCATCCACCCCACCGTCATCTCCGATTCACTCTACAAGGCCTCTATTAAGGCCGTCGACGTCCTCACTGCCATGGCCGTCCCCGTCGAGCTCACCGATCGCGATTCACTCGTCAAATCCGCCAGCACCTCCCTCAACAGCAAGGTCGTCAGCCAGTACTCCACCCTTCTCGCTCCCCTCGCTGTCGACGCCGTCCTCACAGTCATCGATCCCGCCCAGCCTGAAATGGTCGATCTCCGCGATGTTAAGATCGTGAAGAAGCTTGGGGGCACCGTGGACGATACCGAGCTCGTCAGGGGCCTTGTCTTTGACAAGAAGGTGAGCCATGCCGCTGGTGGACCTACTCGCATGGAGAATGCTAAAATTGCCGTGATCCAGTTCCAGATTTCACCGCCGAAAACCGACATTGAGCAGAGCATTGTGGTGAGTGATTACTCTCAGATGGATAGGATTTTGAAGGAAGAGAGGAGTTACATTCTGGGCATGATTAAGAAGATTAAGGCAACTGGTTGCAATGTTTTGTTGATTCAGAAGAGCATTTTAAGAGATGCTGTCACTGATTTGTCTCTGCATTACCTTGCTAAAGCTAAGATATTGGTGATCAAGGATGTGGAAAGGGATGAGATTGAGTTCATTACCAAGACACTCAACTGTTTGCCCATTGCCAACATTGAGCATTTCCGCGCCGAGAAGTTGGGTTATGCTGATCTTGTGGAGGAGGTTTCTCTTGGTGATGGCAAGATTGTGAAGATTTCTGGGATTAAGGACATGGGGAGGACCACAACTGTGCTTGTCCGCGGATCCAACCAGCTTGTGCTAGATGAAGCGGAGCGGAGTCTTCATGATGCTTTGTGTGTTGTTAGGTGCTTGGTTGCCAAGAGGTTTCTCATAGCCGGCGGTGGCGCACCTGAGATAGAGCTGTCCAGGCAACTGGGTGCCTGGGCAAAGGTGCTTCATGGGATGGAGGGTTACTGTGTTCGAGCATTTGCTGAGGCACTTGAAGTCATTCCTTATACTCTGGCTGAGAATGCTGGTTTGAACCCCATTGCAATTGTTACTGAGCTGAGGAATCGTCATGCCCAGGGTGAGATCAATACTGGAATCAATGTGAGGAAGGGTCAGATCACAAACATCTTGGAGGAGAATGTGGTGCAGCCGCTGCTAGTAAGCACGAGTGCTATCACCTTGGCCACAGAGTGCGTGCGGATGATTTTGAAGATTGATGATATTGTAACTGTGAGGTAG 1599 0.5285 MAAIAAPHRSSKTESYVDNKRKEDIRHANIVAARSVANAVRTSLGPKGMDKMISTSSDEVIITNDGATILNKMQVLQPAAKMLVELSKSQDSAAGDGTTTVVVIAGALLEQCLLLLSRGIHPTVISDSLYKASIKAVDVLTAMAVPVELTDRDSLVKSASTSLNSKVVSQYSTLLAPLAVDAVLTVIDPAQPEMVDLRDVKIVKKLGGTVDDTELVRGLVFDKKVSHAAGGPTRMENAKIAVIQFQISPPKTDIEQSIVVSDYSQMDRILKEERSYILGMIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKAKILVIKDVERDEIEFITKTLNCLPIANIEHFRAEKLGYADLVEEVSLGDGKIVKISGIKDMGRTTTVLVRGSNQLVLDEAERSLHDALCVVRCLVAKRFLIAGGGAPEIELSRQLGAWAKVLHGMEGYCVRAFAEALEVIPYTLAENAGLNPIAIVTELRNRHAQGEINTGINVRKGQITNILEENVVQPLLVSTSAITLATECVRMILKIDDIVTVR* 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0052 532 Gene3D - 146 412 IPR027410 -
Lja4g0052 532 Gene3D - 33 529 IPR027413 -
Lja4g0052 532 SUPERFAMILY GroEL equatorial domain-like 19 530 IPR027413 -
Lja4g0052 532 PRINTS Tailless complex polypeptide 1 (chaperone) signature 90 109 IPR017998 GO:0140662
Lja4g0052 532 PRINTS Tailless complex polypeptide 1 (chaperone) signature 414 426 IPR017998 GO:0140662
Lja4g0052 532 PRINTS Tailless complex polypeptide 1 (chaperone) signature 38 54 IPR017998 GO:0140662
Lja4g0052 532 PRINTS Tailless complex polypeptide 1 (chaperone) signature 60 78 IPR017998 GO:0140662
Lja4g0052 532 PRINTS Tailless complex polypeptide 1 (chaperone) signature 380 402 IPR017998 GO:0140662
Lja4g0052 532 SUPERFAMILY GroEL-intermediate domain like 147 410 IPR027410 -
Lja4g0052 532 ProSitePatterns Chaperonins TCP-1 signature 3. 90 98 IPR002194 GO:0005524|GO:0006457|GO:0016887|GO:0051082
Lja4g0052 532 CDD TCP1_delta 18 531 IPR012717 GO:0005524|GO:0006457|GO:0016887|GO:0051082
Lja4g0052 532 ProSitePatterns Chaperonins TCP-1 signature 1. 41 53 IPR002194 GO:0005524|GO:0006457|GO:0016887|GO:0051082
Lja4g0052 532 PANTHER T-COMPLEX PROTEIN 1 SUBUNIT DELTA 12 530 - -
Lja4g0052 532 SUPERFAMILY GroEL apical domain-like 212 385 IPR027409 -
Lja4g0052 532 Pfam TCP-1/cpn60 chaperonin family 36 530 IPR002423 GO:0005524
Lja4g0052 532 Gene3D GroEL 217 376 IPR027409 -
Lja4g0052 532 TIGRFAM chap_CCT_delta: T-complex protein 1, delta subunit 18 531 IPR012717 GO:0005524|GO:0006457|GO:0016887|GO:0051082
Lja4g0052 532 PANTHER CHAPERONIN 12 530 IPR017998 GO:0140662
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0052 Lja-Chr4 431619 433656 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0052 200 426 EF-hand Containing Proteins AT3G14270 24.490 3.67e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0052 K09496 - gmx:100786888 969.918
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0052 4 431619 433656 Lja4g0052 4 431619 433656 ECH