Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0051 ATGCCAATGCCAATGCCAATGGCTATATTCAACCGCTACATCCGATTCCGAACCGCCACAACTCCTTTCCTAACCGCCAGGCGCAGACTTTCTTCTCTTCCCACCTCCACCGTAACCCTCCGCCTCCGCGTTTCCTCCTGCTCCGCCGCCCTCCGCCACACTCGTACTGCTGCGAGCCTCAGGAGAAGCACTGTAGCTCTACCCTTCTGGCACCAGCAGAGCTCCACTTACGGGCGTTTTGCCTACCAGGACGAGTCCAGTGATGAGGATTCCGATGTCGAATTGGCTCCTTCTCAGCAAAAACAATTGGGCGAATCAACCCTCGAAAACATTGATGAGTGGAGGTGGAAGCTCACCATGCTTCTTCGCAATAAAGACGACCACGAAGTTGTCTCCAGGGAGAAGAAGGACCGCCGTGATTTCGACCAGCTTTCACCTTTAGCTACCAGGATGGGTTTATACAGCCGACAGTATGCGAGAGTCCTTGTTTTTAGCAAGTCACCTTTGCCCAATTACCGCCCTGATTTGGATGATAAGCGTCCACAGAGAGAGGTAACCTTGCCGTTTACTGTTCATAGAGAAGTAGACGCTCATCTCCTTACCCATCTTTCACATAAGGCTACAAAAAGAATAGGTGCTTTGGATGATTCATTGCGTACATCAAGTGATGCTAGAGGCATTCCTGCCAATGATGGAGTTTATGAGCAGCCGGAGCCCATGACCCATAATAGTGTTGTCAAGGAGAAAATCCTTCAACGAAGAAGTTTGCAACTGCGTCAACAACAACAAGATTGGCAGGAGTGTCCTGAAGGGCAAAAGATGCTTGAACTTCGTAAAAGTCTTCCTGCATTCAAAGCGAAGGATGCATTTCTGAAAGTCGTTTCAGAGAATCAGGTTGTTGTTGTCTCAGGTGAAACTGGTTGTGGTAAGACCACACAACTTCCTCAATACATATTAGAAACTGAGATTGAAGCTGCACGTGGAGCTGCATGTAATATAATTTGCACTCAGCCCAGAAGAATATCTGCTATGTCTGTTTCTGAAAGAGTTGCAGCAGAGCGAGGGGATAAATTGGGAGAATCTGTTGGCTACAAAGTTCGTTTGGAGGGTATGAAAGGGAGGGATACTCGTCTTCTTTTTTGTACCACTGGTGTATTATTGCGGAGGCTACTTGTGGATAGGAACTTAAAAGGTGTAACTCATGTTATTGTTGATGAAATTCATGAACGTGGAATGAATGAAGATTTTCTTCTCATTGTCCTGAAGGAACTTCTCCCTCGTCGTCCTGATTTGAGGTTAATTTTGATGAGTGCAACCTTAAATGCTGAGCTTTTTTCTTCCTACTTTGATGGTGCACCAACTATGCATATACCTGGTTTTACATTTCCAGTTCGAGCGCATTTTCTTGAAGATGTTCTGGAAAGGACTGGATATCGGTTGACTCCTAATAATCAAATTGATGACTATGGTCAAGAAAAGACATGGAAAATGCAGAAACAAGCTCAAGCTTTCAGAAATAAAAAGAGCCAGATTGCTTCTACTGTTGAGGATGCATTAAAGGTTGCAGACATTAAGGGATATAGCCTACGCACTCGAGAGTCATTGTCTTGCTGGTGTCCTGACTCAATTGGTTTTAACCTTATTGAACACGTGCTTTGCCACATTGTTAAGAATGAAAGGCCAGGTGCTATTCTGGTATTTATGACTGGTTGGGATGATATAAACACTTTAAAGGATCAGCTCCAAGCTCATCCTTTGCTGGGTGATCAGAGCCGAGTATTACTTCTTGCATGCCATGGTTCTATGGCCAGTGCTGAGCAGAAGTTGATATTTGAAAATCCAGAAGGAGGGGTGAGGAAAATTGTTCTTGCTACTAACATGGCAGAGACTAGTATTACCATCAATGATGTTGTCTTTGTGGTAGATTGTGGAAAAGCAAAAGAGACATCATATGATGCAATAAATAACACTCCTTGTTTGCTTCCGTCTTGGATCTCAAAAGCTGCTTCGCGACAGAGAAGAGGAAGGGCTGGTCGTGTTCAACCCGGAGAATGCTACCATCTTTATCCCAAATGTGTTTATGATGCTTTTGCTGATTATCAATTGCCAGAGCTTTTAAGAACACCTTTGCAGTCCTTATGTCTGCAAATTAAAACTCTACAACTTGGAAGCATCTCTGAGTTTTTATCCAGAGCTTTGCAGCAGCCAGAGCCTCTCTCGGTTCAAAATGCTATTGAATATTTGAAGACTATTGGAGCCTTAGATGAGAATGAAAATTTGACAGTTCTAGGGCACAAGTTGTCGATGCTTCCTGTAGAACCCAAACTTGGCAAGATGCTCATTTTGGGAGCTATCTTCAACTGTTTGGATCCCATATTGACTGTTGTCGCTGGGCTTAGTGTGAGAGATCCATTTGTAATGCCAGCTGATAAGAAAGATCTTGCAGACTCTGCTAAGGCCCAATTTGCTGCTGACTATAGTGATCATCTTGCACTTATCCGAGCTTATGAGGGTTGGAAGGATGCTGAAGCACGGAAAACTGGTTATGAGTATTGTTGGCGAAATTTTCTTTCTTCTCAAACACTTAAAGCAATTGACTCTCTTCGAAAGCAATTTTTTTACTTGCTCAAAGATATTGGTCTGGTTGATAACAATTCTGAAACCCACAATACATGGAGTCGTGAGGATCATCTAGTCCGAGCAGTTATCTGTGCGGGTTTGTATCCTGGAGTATCCTCTGTTGTGAACAAAGATAAGTCAATATCACTGAAAACAATGGAGGATGGTCAGGTTCTTCTGTATGGTAACTCTGTAAATGGCCGTGTATCCAAAATTCCATACCCATGGTTAGTGTTTAATGAAAAGGTGAAAGTGAATTCAGTATTCCTTAGGGATTCAACTGGTATATCTGATTCCATGCTGCTCTTATTTGGTGGGAATATATCCAGAGGCGGATTAGATGGTCACCTGAAAATGTTGGGAGGGTATTTGGAGTTTTTCATGAAACCAGAATTAGCCAAGACTTACTTAACTCTGAAGAGGGAAATGGACGAACTTATACAGAAAAAACTTCTGGATCCCATGTTGAATATACAATCACATGACAAGCTTCTTTCAGCTTTAAGATTGTTGGTATCAGAGGACCATTGTGATGGCAGATTTGTCTTTGGTCGCCAGGCCCCATCACAGTCAAATAAGGCACTGAAATACAAAAGTGGTGATGGAGCTGAGGGTGATAATTATAAAAATCAGCTTCAAACATTCCTTACCAGGGCTGGACATGAACCGCCAACTTACAAGACGAAGCAACTAAAAAACAACCAATTCCGTTCTACTGTCATATTCAACGGCTTGGACTTTGTTGGTCAGCCATGCAATAGCAAAAAACTGGCAGAAAAATCTGCTGCTTCCGAGGCTATTCTATGGTTAAAAGGGGATACCCATTCTTCTGGTAGTATTGACCATGCATCTGTTCTACTGAAAAAGAGCAGCAAGAAAAGTAGAAAAAGACCGTTTAGTGATGCTAAATGGAGTTGA 3537 0.4297 MPMPMPMAIFNRYIRFRTATTPFLTARRRLSSLPTSTVTLRLRVSSCSAALRHTRTAASLRRSTVALPFWHQQSSTYGRFAYQDESSDEDSDVELAPSQQKQLGESTLENIDEWRWKLTMLLRNKDDHEVVSREKKDRRDFDQLSPLATRMGLYSRQYARVLVFSKSPLPNYRPDLDDKRPQREVTLPFTVHREVDAHLLTHLSHKATKRIGALDDSLRTSSDARGIPANDGVYEQPEPMTHNSVVKEKILQRRSLQLRQQQQDWQECPEGQKMLELRKSLPAFKAKDAFLKVVSENQVVVVSGETGCGKTTQLPQYILETEIEAARGAACNIICTQPRRISAMSVSERVAAERGDKLGESVGYKVRLEGMKGRDTRLLFCTTGVLLRRLLVDRNLKGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPDLRLILMSATLNAELFSSYFDGAPTMHIPGFTFPVRAHFLEDVLERTGYRLTPNNQIDDYGQEKTWKMQKQAQAFRNKKSQIASTVEDALKVADIKGYSLRTRESLSCWCPDSIGFNLIEHVLCHIVKNERPGAILVFMTGWDDINTLKDQLQAHPLLGDQSRVLLLACHGSMASAEQKLIFENPEGGVRKIVLATNMAETSITINDVVFVVDCGKAKETSYDAINNTPCLLPSWISKAASRQRRGRAGRVQPGECYHLYPKCVYDAFADYQLPELLRTPLQSLCLQIKTLQLGSISEFLSRALQQPEPLSVQNAIEYLKTIGALDENENLTVLGHKLSMLPVEPKLGKMLILGAIFNCLDPILTVVAGLSVRDPFVMPADKKDLADSAKAQFAADYSDHLALIRAYEGWKDAEARKTGYEYCWRNFLSSQTLKAIDSLRKQFFYLLKDIGLVDNNSETHNTWSREDHLVRAVICAGLYPGVSSVVNKDKSISLKTMEDGQVLLYGNSVNGRVSKIPYPWLVFNEKVKVNSVFLRDSTGISDSMLLLFGGNISRGGLDGHLKMLGGYLEFFMKPELAKTYLTLKREMDELIQKKLLDPMLNIQSHDKLLSALRLLVSEDHCDGRFVFGRQAPSQSNKALKYKSGDGAEGDNYKNQLQTFLTRAGHEPPTYKTKQLKNNQFRSTVIFNGLDFVGQPCNSKKLAEKSAASEAILWLKGDTHSSGSIDHASVLLKKSSKKSRKRPFSDAKWS* 1179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0051 1178 SMART DRBM_3 1081 1144 IPR014720 -
Lja4g0051 1178 SMART ultradead3 279 472 IPR014001 -
Lja4g0051 1178 Pfam DEAD/DEAH box helicase 291 442 IPR011545 GO:0003676|GO:0005524
Lja4g0051 1178 PANTHER DEXH-BOX ATP-DEPENDENT RNA HELICASE DEXH5, MITOCHONDRIAL 68 1072 - -
Lja4g0051 1178 Gene3D - 723 825 - -
Lja4g0051 1178 Pfam Double-stranded RNA binding motif 1081 1142 IPR014720 -
Lja4g0051 1178 Gene3D - 233 459 IPR027417 -
Lja4g0051 1178 SUPERFAMILY dsRNA-binding domain-like 1067 1145 - -
Lja4g0051 1178 SMART ha2_5 743 833 IPR007502 GO:0004386
Lja4g0051 1178 Gene3D - 544 699 IPR027417 -
Lja4g0051 1178 PANTHER ATP-DEPENDENT RNA HELICASE 68 1072 - -
Lja4g0051 1178 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 280 859 IPR027417 -
Lja4g0051 1178 CDD SF2_C_RHA 538 689 - -
Lja4g0051 1178 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 291 458 IPR014001 -
Lja4g0051 1178 Gene3D - 1059 1148 - -
Lja4g0051 1178 CDD DEXHc_RHA-like 303 457 - -
Lja4g0051 1178 Pfam Helicase associated domain (HA2) 744 817 IPR007502 GO:0004386
Lja4g0051 1178 MobiDBLite consensus disorder prediction 1147 1178 - -
Lja4g0051 1178 SMART helicmild6 575 681 IPR001650 -
Lja4g0051 1178 Pfam Helicase conserved C-terminal domain 549 680 IPR001650 -
Lja4g0051 1178 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 899 981 IPR011709 -
Lja4g0051 1178 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 547 721 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0051 Lja-Chr4 419264 429814 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0051 K14442 - gmx:100791006 1905.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0051 4 419264 429814 Lja4g0051 4 419264 429814 ECH