Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0038 ATGAGTCATGAGCTGGTCGAGACTTACTCCTGCATGCCATCCACGGAGCGCGGCCGCGGGATTCTCATCTCCGGCGACCCAAAGTCCAACTCCATGCTCTACACCAACGGCAGATCGGTCGTCATCATCAACCTTCAAAACCCCCTCCAAGTCTCCGTCTATGGGGAACACGCCTACCCTGCCACCGTCGCTCGATTCTCCCCCAACGGCGAGTGGGTCGCCTCCGCTGACTCCTCCGGCACCGTCAGGATCTGGGGCACCCGCAACGACTTCGTTTTGAAGAAGGAGTTCCGTGTCCTCTCCGGTCGGATCGATGACCTTCAATGGTCCCCCGATGGTCTCAGGATCGTGGCCTGCGGCGATGCTAAAGGGAAATCTTTCGTCCGCGCTTTCATGTGGGATTCAGGGACCAACGTTGGTGAATTTGATGGTCATTCCAGGCGAGTTTTAAGTTGTGCATATAAACCGACAAGACCTTTCCGCATTGTCACTTGTGGAGAGGATTTTCTGGTGAACTTTTATGAAGGACCGCCATTTAGATTTAAGCAATCTCACAGGGATCATTCAAATTTTGTCAATTGTGTAAGATATTCTCCAGACGGCAGTAAATTTTTAAGTGTGGGTTCTGACAAAAGGGGTATCATATTTGACGGGAAGAGTGGAGAGAAGATTGGTGAGTTGTCTTCTGAAGGGGGGCATACTGGCAGCATTTATGCTGTTAGCTGGAGTCCTGATGGAAAACAAGTGCTGACTGTATCTGCTGATAAGTCTGCAAAAGTATGGGACATATCTGAGGACAACAATGGAAAAGTGAAGAAAACATTGACTTGTCCCGGCTCTGGTGGAGTTGAAGATATGCTAGTAGGGTGCCTGTGGTTGAATGAATATATTGTCGCTGTTTCTCTTGGTGGGACAATATCTATATTTTTATCAAGTGATCTTGATAAAGCCCCAACATCATTTTCTGGACACATGAAAAATGTTTCCTCCTTAACTATTCTTAAAAGTAACCCTAGAATACTCTTGTCCAGCAGTTATGATGGCTTAATAGTTAAGTGGATTCAAGGGATTGGTTACAGTGGTAAATTACATAGGAAGGAGAACTGTCAAATTAAATGCTTGGCGGCTGTAGAAGATGAAATTATTACATCTGGATTTGATAACAAGATATGGCGAGTTTCTTTGCATGGGGATCAGTGTGGAGATGCTGAAGCCATTGATATCGGAAATCAACCAAAGGATTTTAGTGTTGCACTTCTTTCTCCTGAACTTGCTCTGGTTTCTATTGACTCCGGAGTTGTCGTGCTGCGTGGTACCAAAATTGTGTCAACCATTAACCTCGGATTTACTGTCTCAGCAACTGCTGTCTCTCCTGATGGAAGTGAAGCCATTATTGGCGGACAGGATGGTAAATTGCATATATATTCTATTTCTGGCGATACATTTGAAGAAGAGGCTGTCCTAGAGAAACATAGGGGAGCTATTAGTGTAATTCGGTATTCTCCAGACTTTTCAATGTTTGCATCAGGGGATGTCAATCGAGAAGCTGTAGTGTGGGACCGTGCCTCCCGAGATGTGAAGCTTAAGAATATGTTGTACCATTCTGCTCGGATAAATTGCCTGGCTTGGTCCCCTGATAGCCGTAGGATTGCTACAGGATCCCTTGATACATGTGTCATCATATATGAAATTGACCAACCTGCATCTAGTAGAGTTACCATAAAGGGTGCTCACTTAGGCGGGGTTTATGGCTTGGTATTCTCTGACGAGTTCAGTTTGGTTAGCTCGGGTGAGGATGCTTTTATCCGTGTCTGGAAGATAACCGCTCCATGA 1833 0.4583 MSHELVETYSCMPSTERGRGILISGDPKSNSMLYTNGRSVVIINLQNPLQVSVYGEHAYPATVARFSPNGEWVASADSSGTVRIWGTRNDFVLKKEFRVLSGRIDDLQWSPDGLRIVACGDAKGKSFVRAFMWDSGTNVGEFDGHSRRVLSCAYKPTRPFRIVTCGEDFLVNFYEGPPFRFKQSHRDHSNFVNCVRYSPDGSKFLSVGSDKRGIIFDGKSGEKIGELSSEGGHTGSIYAVSWSPDGKQVLTVSADKSAKVWDISEDNNGKVKKTLTCPGSGGVEDMLVGCLWLNEYIVAVSLGGTISIFLSSDLDKAPTSFSGHMKNVSSLTILKSNPRILLSSSYDGLIVKWIQGIGYSGKLHRKENCQIKCLAAVEDEIITSGFDNKIWRVSLHGDQCGDAEAIDIGNQPKDFSVALLSPELALVSIDSGVVVLRGTKIVSTINLGFTVSATAVSPDGSEAIIGGQDGKLHIYSISGDTFEEEAVLEKHRGAISVIRYSPDFSMFASGDVNREAVVWDRASRDVKLKNMLYHSARINCLAWSPDSRRIATGSLDTCVIIYEIDQPASSRVTIKGAHLGGVYGLVFSDEFSLVSSGEDAFIRVWKITAP* 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0038 610 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 488 520 - -
Lja4g0038 610 ProSiteProfiles Trp-Asp (WD) repeats profile. 531 572 IPR001680 GO:0005515
Lja4g0038 610 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 230 264 - -
Lja4g0038 610 ProSiteProfiles Trp-Asp (WD) repeats profile. 185 226 IPR001680 GO:0005515
Lja4g0038 610 ProSiteProfiles Trp-Asp (WD) repeats profile. 230 271 IPR001680 GO:0005515
Lja4g0038 610 Gene3D - 12 338 IPR015943 GO:0005515
Lja4g0038 610 Gene3D - 9 607 IPR015943 GO:0005515
Lja4g0038 610 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 531 565 - -
Lja4g0038 610 PANTHER ACTIN-INTERACTING PROTEIN 1-1 4 608 - -
Lja4g0038 610 Pfam WD domain, G-beta repeat 64 85 IPR001680 GO:0005515
Lja4g0038 610 Pfam WD domain, G-beta repeat 534 562 IPR001680 GO:0005515
Lja4g0038 610 Pfam WD domain, G-beta repeat 227 262 IPR001680 GO:0005515
Lja4g0038 610 Pfam WD domain, G-beta repeat 184 211 IPR001680 GO:0005515
Lja4g0038 610 ProSitePatterns Trp-Asp (WD) repeats signature. 249 263 IPR019775 -
Lja4g0038 610 CDD WD40 57 350 - -
Lja4g0038 610 ProSiteProfiles Trp-Asp (WD) repeats profile. 575 610 IPR001680 GO:0005515
Lja4g0038 610 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 575 610 - -
Lja4g0038 610 SUPERFAMILY WD40 repeat-like 26 353 IPR036322 GO:0005515
Lja4g0038 610 SMART WD40_4 178 217 IPR001680 GO:0005515
Lja4g0038 610 SMART WD40_4 314 354 IPR001680 GO:0005515
Lja4g0038 610 SMART WD40_4 567 606 IPR001680 GO:0005515
Lja4g0038 610 SMART WD40_4 90 134 IPR001680 GO:0005515
Lja4g0038 610 SMART WD40_4 438 476 IPR001680 GO:0005515
Lja4g0038 610 SMART WD40_4 220 262 IPR001680 GO:0005515
Lja4g0038 610 SMART WD40_4 47 86 IPR001680 GO:0005515
Lja4g0038 610 SMART WD40_4 481 520 IPR001680 GO:0005515
Lja4g0038 610 SMART WD40_4 135 175 IPR001680 GO:0005515
Lja4g0038 610 SMART WD40_4 525 563 IPR001680 GO:0005515
Lja4g0038 610 ProSiteProfiles Trp-Asp (WD) repeats profile. 54 95 IPR001680 GO:0005515
Lja4g0038 610 SUPERFAMILY WD40 repeat-like 295 607 IPR036322 GO:0005515
Lja4g0038 610 ProSiteProfiles Trp-Asp (WD) repeats profile. 488 520 IPR001680 GO:0005515
Lja4g0038 610 PANTHER WD-REPEATCONTAINING PROTEIN WDR1 4 608 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0038 Lja-Chr4 309890 314589 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0038 464 609 Miscellaneous Gene Families AT5G08390 29.801 2.93e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0038 K24736 - gmx:100794702 1135.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0038 4 309890 314589 Lja4g0038 4 309890 314589 ECH