Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0035 ATGAAGGGTCTAAAGCAGCATTATAGGTTGTTACTGGTGACTCGATTGTGCCACACCAAGCCCTTGTTAACAGTGAATGGGGAGTATCCGGGGCCAACCATTGCTATCCATGAAGGTGACAATGTTGAAGTTAAGGTGACCAATCACATTGCTCAGAACACTACTCTTCACTGGCATGGAGTAAAGCAACTAAGAACAGGATGGGCAGATGGTCCAGCATACATCACACAATGTCCTATTAAGGGAGGGCATTCCTATACTTACAAGTTCAGGGTGATCAACCAAAGAGGAACCCTTTTATGGCATGCACATTATTCTTGGCAAAGAGCTTCAGTATATGGTGCCTTTATAATTTACCCCCGCATACCTTACCCCTTCTCTGCTCCAGTTGATGCTGAGATCCCCATTATTTTAGGTGAATGGTGGAATTCAGATGTGGAAAAAATGCAGAGTGAGATGATGAAGTATGGAGGTGGACCAAATAGTTCTGATGCTTACACCATAAATGGTTTGCCCGGACCTCTTTATCCTTGTTCAAACAAAGATACTTTCATCTACACTGTGGAAAGTGGTAAAACCTACTTGCTTAGAATCATCAATGCAGCTCTCAGTGACGAGCTCTACTTTGGCGTTGCTAACCATACCTTAACTGTTGTTGAGGTTGATGCATCATACACAAAACCATTTAACACAAGAGCAATCATGGTCACTCCTGGCCAGACCACCAATGTGCTGCTCAGAGCAAATCAAATTCCTGATTCTTCAGGCTTGTTTGTTATGGCAGCTAGGCCTTACCGCACATCGGTTTTTCCATTTGACAATTCCACCACAATTGGATATTTGAGGTATAACAGCACAAGAGGTGAGAAAGTCAAACCTCCTCATGTTCCTACTGATCTTTCTATTCACAACCTTCCTGAGATGGAAGATACAAAGTTTGAAACAGAATTCTCTGCTAAACTCAGAAGCATAGCAACTTCTCAATTTCCATGTAAGGTACCTAAGAAGATTGACAAGCGAGTTATAACAACTATAAGCCTTAACCTTCAGGATTGTCCCGCAAACAGGACCTGCAAAGGATATAATGGGAAGAGATATTTTGCTTCAATGAATAACCAGTCCTTTGTTAGGCCTTCCATTTCAGTATTAGACTCTTACTATAGGAACCTCAAACCCCATGGATCCTCTCTTGATTTCCCAGAGAGGCCTCCAAAATCTTTTGACTACAGTGGTGTGGACCCAGTAACAGAAAACATGAACACAGAATTTGGCACAAGACTTTTAGCATTGCCTCATGGCACAAACTTGGAGATAGTGTTTCAGGACACTGGTTTCCTTAATGTGGAGAACCATCCAATTCACGTTCATGGTCACAACTTCTTCATTGTAGGCATGGGGTTGGGTAACTACAATGTTAGCAATGACCCAGCAAATTATAATCTTGTTGATCCTCCAGAGAGAAATACAGTGGGAGTTCCAAAGGGTGGATGGGCTGCAATTAGGCTTAAGGCAGATAATCCAGGAGTGTGGTTTATACACTGCCATCTTGAGGAGCACACATCTTGGGGTCTTGCCATGGCTTTCATTGTGAAAGATGGTTCTGCAGCATCTGAATGCTTGCTTCCTCCCCCTGAAGATTTTCCTTCCTGTTGA 1653 0.4283 MKGLKQHYRLLLVTRLCHTKPLLTVNGEYPGPTIAIHEGDNVEVKVTNHIAQNTTLHWHGVKQLRTGWADGPAYITQCPIKGGHSYTYKFRVINQRGTLLWHAHYSWQRASVYGAFIIYPRIPYPFSAPVDAEIPIILGEWWNSDVEKMQSEMMKYGGGPNSSDAYTINGLPGPLYPCSNKDTFIYTVESGKTYLLRIINAALSDELYFGVANHTLTVVEVDASYTKPFNTRAIMVTPGQTTNVLLRANQIPDSSGLFVMAARPYRTSVFPFDNSTTIGYLRYNSTRGEKVKPPHVPTDLSIHNLPEMEDTKFETEFSAKLRSIATSQFPCKVPKKIDKRVITTISLNLQDCPANRTCKGYNGKRYFASMNNQSFVRPSISVLDSYYRNLKPHGSSLDFPERPPKSFDYSGVDPVTENMNTEFGTRLLALPHGTNLEIVFQDTGFLNVENHPIHVHGHNFFIVGMGLGNYNVSNDPANYNLVDPPERNTVGVPKGGWAAIRLKADNPGVWFIHCHLEEHTSWGLAMAFIVKDGSAASECLLPPPEDFPSC* 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0035 550 CDD CuRO_2_LCC_plant 134 283 IPR034285 -
Lja4g0035 550 TIGRFAM laccase: laccase 12 550 IPR017761 GO:0046274|GO:0048046|GO:0052716
Lja4g0035 550 Pfam Multicopper oxidase 399 533 IPR011706 GO:0005507|GO:0016491
Lja4g0035 550 SUPERFAMILY Cupredoxins 129 301 IPR008972 -
Lja4g0035 550 CDD CuRO_1_LCC_plant 13 120 IPR034288 GO:0005507
Lja4g0035 550 SUPERFAMILY Cupredoxins 7 147 IPR008972 -
Lja4g0035 550 Gene3D - 4 120 IPR008972 -
Lja4g0035 550 ProSitePatterns Multicopper oxidases signature 1. 508 528 IPR033138 -
Lja4g0035 550 PANTHER LACCASE-1 11 550 - -
Lja4g0035 550 Gene3D - 354 550 IPR008972 -
Lja4g0035 550 SUPERFAMILY Cupredoxins 334 550 IPR008972 -
Lja4g0035 550 Gene3D - 129 327 IPR008972 -
Lja4g0035 550 Pfam Multicopper oxidase 134 285 IPR001117 -
Lja4g0035 550 Pfam Multicopper oxidase 14 121 IPR011707 GO:0005507
Lja4g0035 550 PANTHER MULTI-COPPER OXIDASE 11 550 IPR045087 -
Lja4g0035 550 ProSitePatterns Multicopper oxidases signature 2. 513 524 IPR002355 GO:0005507
Lja4g0035 550 CDD CuRO_3_LCC_plant 396 533 IPR034289 GO:0005507
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0035 Lja-Chr4 285730 288613 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0035 K05909 - qsu:112038583 896.345
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0035 4 285730 288613 Lja4g0035 4 285730 288613 ECH