Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0025 ATGATGGCTGATGCATTTGATGAAGAGTGTGATTATCTGTTCAAGACTGTGTTGATTGGTGACTCTGGAGTTGGGAAATCAAATCTGCTGTCAAGGTTTGCAAAAGATGAATTCCGGTTGGATTCGAAGCCCACTATTGGAGTTGAATTTGCTTACAGTAATATCAAGGTCAGAGACAAACTCATCAAAGCTCAGATATGGGATACTGCCGGCCAAGAGAGGTTCAGAGCAATCACAAGCTCGTATTACAGAGGAGCCTTGGGGGCAATGGTGGTGTATGACATAACGAGGCGATCAAGCTATGAGAATGTAAGAAACTGGTTATTGGAGCTGAGAGAGTTTGGTGGGGAAGACATGGTGGTTATTCTGGTGGGAAACAAAAGTGATCTGGGTCAATCAAGAGAAGTTGAGAAGGAAGAAGGTAAAGGGTTTGCAGAGACAGAAGGGTTGTGTTTCATGGAAACCTCTGCTCTGAAGAATCTGAACGTTGAGGAAGTGTTCTTAGAAATGATTACAAAGATACTTGACATCACATGCCAGAGAAGTTTGGAAGCCAAAGTTGACGAGAAACCGATTAATGTTTTCAGTGGGAAGGAGATTCATCTAGTGGATGAAGTCACTGCAACTAAACAAGCCACTTGCTGTTCAACATAA 654 0.4266 MMADAFDEECDYLFKTVLIGDSGVGKSNLLSRFAKDEFRLDSKPTIGVEFAYSNIKVRDKLIKAQIWDTAGQERFRAITSSYYRGALGAMVVYDITRRSSYENVRNWLLELREFGGEDMVVILVGNKSDLGQSREVEKEEGKGFAETEGLCFMETSALKNLNVEEVFLEMITKILDITCQRSLEAKVDEKPINVFSGKEIHLVDEVTATKQATCCST* 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0025 217 PANTHER DRAB5-RELATED 2 216 - -
Lja4g0025 217 ProSiteProfiles small GTPase Rab1 family profile. 9 215 - -
Lja4g0025 217 ProSiteProfiles small GTPase Rho family profile. 7 175 - -
Lja4g0025 217 Gene3D - 6 215 IPR027417 -
Lja4g0025 217 SMART rab_sub_5 14 177 - -
Lja4g0025 217 SMART ran_sub_2 19 202 - -
Lja4g0025 217 CDD Rab11_like 11 174 - -
Lja4g0025 217 SMART ras_sub_4 11 177 - -
Lja4g0025 217 PRINTS Transforming protein P21 ras signature 55 77 - -
Lja4g0025 217 PRINTS Transforming protein P21 ras signature 117 130 - -
Lja4g0025 217 PRINTS Transforming protein P21 ras signature 14 35 - -
Lja4g0025 217 PRINTS Transforming protein P21 ras signature 152 174 - -
Lja4g0025 217 PRINTS Transforming protein P21 ras signature 37 53 - -
Lja4g0025 217 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 190 IPR027417 -
Lja4g0025 217 ProSiteProfiles small GTPase Ras family profile. 8 207 IPR001806 GO:0003924|GO:0005525
Lja4g0025 217 PANTHER SMALL GTPASE SUPERFAMILY, P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASE-RELATED 2 216 - -
Lja4g0025 217 SMART rho_sub_3 16 177 IPR001806 GO:0003924|GO:0005525
Lja4g0025 217 TIGRFAM small_GTP: small GTP-binding protein domain 13 167 IPR005225 GO:0005525
Lja4g0025 217 Pfam Ras family 15 175 IPR001806 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0025 Lja-Chr4 233262 235824 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0025 15 178 EF-hand Containing Proteins AT5G27540 28.409 1.77e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0025 K07976 - gmx:100784107 377.096
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0025 4 233262 235824 Lja4g0025 4 233262 235824 ECH