Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0022 ATGGCCTCAATGCCGAGGTCCCTTTTCACCATTCTCTTCCTCACCCTCTTCCTCATCTCCCACATTTCAGTGCTCAAGGTTTCAGCAGCAGCAGCAATATTTTACAACAAATGCCCCCACCCAGTTTGGCCAGGCATCCAACCAGGCGCAGGAAAGCCCGTTCTGGCCCGCGGAGGCTTCAAGCTCCTACCAAACAAGGCCTACTCTCTCCAACTCCCCGCCCTCTGGTCCGGCCGCTTCTGGGGTCGCCACGACTGCACCTTCGATGCATCCGGCCGCGGCCACTGCGCCACCGGCGACTGCGGAGGCTCAATCTTCTGCAACGGCCTCGGTGGGGCCCCACCGGCGACGCTGGCGGAGTTCACCCTGGGAAACGACCAGGATTTCTACGACGTGAGCCTGGTGGATGGGTACAACCTTCCGATCTCGATCACTCCGTTGAAGGGATCTGGGAAGTGCAGCTATGCGGGGTGCGTGAGGGACCTGAACATCATGTGTCCGGTGGGCCTGCAGGTGAGGTCGCGTGACAACAAGCGCGTGGTGGCTTGCAAGAGTGCTTGCGCTGCTTTCAACTCTCCTAGGTACTGCTGCACGGGGTCTTATGGAAGCCCACAGTCCTGCAAGCCCACGGCTTACTCGAGAATCTTCAAGACCGCATGCCCAAAAGCCTACTCCTATGCCTACGATGACCCTACAAGCATTTCCACTTGCACACACGCTAGCTATTTGATCACTTTCTGCCCACACCACCGCTGA 756 0.586 MASMPRSLFTILFLTLFLISHISVLKVSAAAAIFYNKCPHPVWPGIQPGAGKPVLARGGFKLLPNKAYSLQLPALWSGRFWGRHDCTFDASGRGHCATGDCGGSIFCNGLGGAPPATLAEFTLGNDQDFYDVSLVDGYNLPISITPLKGSGKCSYAGCVRDLNIMCPVGLQVRSRDNKRVVACKSACAAFNSPRYCCTGSYGSPQSCKPTAYSRIFKTACPKAYSYAYDDPTSISTCTHASYLITFCPHHR* 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0022 251 PRINTS Pathogenesis-related protein signature 79 90 IPR001938 -
Lja4g0022 251 PRINTS Pathogenesis-related protein signature 238 247 IPR001938 -
Lja4g0022 251 PRINTS Pathogenesis-related protein signature 92 121 IPR001938 -
Lja4g0022 251 PRINTS Pathogenesis-related protein signature 128 144 IPR001938 -
Lja4g0022 251 PRINTS Pathogenesis-related protein signature 31 43 IPR001938 -
Lja4g0022 251 SUPERFAMILY Osmotin, thaumatin-like protein 34 249 IPR037176 -
Lja4g0022 251 SMART tha2 34 248 IPR001938 -
Lja4g0022 251 Gene3D Thaumatin 32 248 IPR037176 -
Lja4g0022 251 ProSiteProfiles Thaumatin family profile. 29 250 IPR001938 -
Lja4g0022 251 PANTHER OS03G0233200 PROTEIN 16 250 IPR001938 -
Lja4g0022 251 CDD TLP-PA 34 247 - -
Lja4g0022 251 ProSitePatterns Thaumatin family signature. 92 107 IPR017949 -
Lja4g0022 251 PIRSF PR5 1 251 IPR001938 -
Lja4g0022 251 Pfam Thaumatin family 36 248 IPR001938 -
Lja4g0022 251 PANTHER THAUMATIN-LIKE PROTEIN 16 250 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0022 Lja-Chr4 216185 217452 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0022 12 249 Receptor kinase-like Gene Family AT5G38280 45.714 4.12e-64 209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0022 - - gmx:100784636 450.284
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0022 4 216185 217452 Lja4g0022 4 216185 217452 ECH