Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0018 ATGGCGTCTCAGTCAGGGAACTTATGGGTCTTGTTGGGGCTGGGCTTGGCCGGAATCTTCGTCCTCACCAGGAAGCTCAAGGAACACAAGGAGGATTTAGGGGCTTTCATTCAAAAGCTTCACCTGCTTCCTCCTCCTCAGCCCGCTCCCCCTAAAGCTCCTCACCCTCTCACCGCTCTCACCTTCGCTTTCTCCGACCTATTTGACATTCACGGACATGTATCCACTTTTGGCCATCCCGACTGGGCAACCTCGCACCAACCTGCTTCTTCTACTTCTCCTGCAATCTCTGCTCTTGTTCAAGCTGGCGCTACCGCTCTCGGAACCACTCTTGTTGACCCCTTTGCATACGGTATTACTGGCCAAAACAAGCATTATGGAACGCCCACCAACCCTGCTGTGCCTTCTCGACTGCCCGGTGGATCCTCTAGTGGTGCTGCTGTCGCTGTTGCTGCTAATTTTGTTCATTTCTCATTGGGTATTGATACTACTGGAGGGGTCAGACTACCTGCTGCATTTTGTGCCATTTTAGGATTTCGACCTTCATATGCTGCTGTATCTCATGTGGGAATCATACCTGTTTCAACAAGTTTGGACACTGTAGGTTGGTTTGCCAAGGATCCTAATATATTGCGTCGAGTTGGCCATATACTTCTACAAGCACCACTTGCAATTCAATGCGGTCCTCGGCAAATAATTATAGCGGATGATTGTTTTCAACATCAAATTGTTCCTCTTGACAGGAGTTCTCAAGTGCTGATCAAAGCCACGGAGAAGCTTTTTGGAAGGCAAGTGTTGAAGCATATAAATCTGGAGGACTACATAAGTTCTAAAGTTCCTAGCTTGGAGACCTGCTCGAGCCAGAAAACAAATGGTGAAGTGAAAACATCTTCATTAAAATTACTTGCCAACATTATGCAATTCATTCAAAGACATGAATTTGGACTTAAGCATGCTGAGTGGATGGACATAGTAAAACCTGATCTCCATCCAGCTGTTACAGCTCAGTTGCATGGAAAATTAGAGATATCCGATGCAGAGATTGAAAATTCTAAATCTGTTAGAAGTGAGATGCGTGCTGCTATAAATTCGCTTTTGAAGGATGAAAGAATTTTGGTGATCCCTACTGTAGCTGATCCTCCTCCAAAATTAGGTGGGAAAGAGATTCTATCACAGGATTATCAGAGCCATATGTTTAGTGCGCTAAGTATTGCTAGCATATCGGGTTGCTGTCAGGTCACAATCCCACTGGGATTCTACGACAAGTATCCTGTTTCAGTGTCCTTATTAGCTCGGCATGGTGGTGATCGCTTTTTACTTGACACACTACAGACCATGTACACAACTCTCCAAGAGCAGGCTGATATTGCTTCCAAAAGTAAACCATCAAGCAATGTTGTCAGTAAGGAACAATCTGCTGAAATTGCCAAAGAGAAGGGAAATCAAGCCTACAAAGATAAGCAGTGGCAGAAAGCCATTGGATTTTATACAGAAGCTATCAAACTCTGTGGAGATAATGCGACATACTACAATAACAGGGCTCAAGCATATCTAGAACTTGGAAGTTACCTCCAAGCTGAGGCAGATTCTACAAAAGCTATTAACATTGACAAGAAGAATGTGAAGGCGTATTTTCGTAGAGGTACAGCTAGAGAGATGCTAGGCTACTATAAGGATGCATTTGATGATTTTACATATGCTCTGGTACTTGAGCCAACCAACAAAAGGGCAGCTACTGCTGCTGAAAGGTTGAGGAAGCTATTCCAGTAG 1770 0.4446 MASQSGNLWVLLGLGLAGIFVLTRKLKEHKEDLGAFIQKLHLLPPPQPAPPKAPHPLTALTFAFSDLFDIHGHVSTFGHPDWATSHQPASSTSPAISALVQAGATALGTTLVDPFAYGITGQNKHYGTPTNPAVPSRLPGGSSSGAAVAVAANFVHFSLGIDTTGGVRLPAAFCAILGFRPSYAAVSHVGIIPVSTSLDTVGWFAKDPNILRRVGHILLQAPLAIQCGPRQIIIADDCFQHQIVPLDRSSQVLIKATEKLFGRQVLKHINLEDYISSKVPSLETCSSQKTNGEVKTSSLKLLANIMQFIQRHEFGLKHAEWMDIVKPDLHPAVTAQLHGKLEISDAEIENSKSVRSEMRAAINSLLKDERILVIPTVADPPPKLGGKEILSQDYQSHMFSALSIASISGCCQVTIPLGFYDKYPVSVSLLARHGGDRFLLDTLQTMYTTLQEQADIASKSKPSSNVVSKEQSAEIAKEKGNQAYKDKQWQKAIGFYTEAIKLCGDNATYYNNRAQAYLELGSYLQAEADSTKAINIDKKNVKAYFRRGTAREMLGYYKDAFDDFTYALVLEPTNKRAATAAERLRKLFQ* 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0018 589 Gene3D Tetratricopeptide repeat domain 445 589 IPR011990 GO:0005515
Lja4g0018 589 Pfam Amidase 54 207 IPR023631 -
Lja4g0018 589 Gene3D Amidase signature (AS) domain 45 444 IPR036928 -
Lja4g0018 589 ProSiteProfiles TPR repeat profile. 507 540 IPR019734 GO:0005515
Lja4g0018 589 SUPERFAMILY TPR-like 471 579 IPR011990 GO:0005515
Lja4g0018 589 SMART tpr_5 473 506 IPR019734 GO:0005515
Lja4g0018 589 SMART tpr_5 507 540 IPR019734 GO:0005515
Lja4g0018 589 SMART tpr_5 541 574 IPR019734 GO:0005515
Lja4g0018 589 SUPERFAMILY Amidase signature (AS) enzymes 54 442 IPR036928 -
Lja4g0018 589 ProSiteProfiles TPR repeat profile. 541 574 IPR019734 GO:0005515
Lja4g0018 589 PANTHER OUTER ENVELOPE PROTEIN 64, CHLOROPLASTIC 1 589 - -
Lja4g0018 589 PANTHER AMIDASE 1 1 589 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0018 Lja-Chr4 148040 153913 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0018 30 446 Acyl Lipid Metabolism Gene Families AT1G08980 47.031 1.06e-130 387
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0018 - - gmx:100786059 931.013
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0018 4 148040 153913 Lja4g0018 4 148040 153913 ECH