Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g5207 ATGAATCGCCTGCTTGCATTTCTCTTCCACCAGGGAGTATTGGATGCGCAATTCTTGCAGCTTCAACAGCTGCAAGATGAGACTTCCCCCAACTTCCTCTCTGAAGTTGTCAACATTTACTTCCATGAATCAGAAAAGCTTCTCAGGAATCTCAGAGGATTGCTAATGGAGAGGGAGTTCTCAGATTACAAGAAAATTGGAAAACATTTGAATCAGTTCATGGGTAGCAGCTCAAGCATTGGTGCCAAGAGAGTCACCAGCGTCTGCATTGCCTTTCGTGCAGCTACTGACCACAACAACCGTGCAGGATGTTTACGAGCATTGGAGATGCTGGAGCAGGAGTATTGCTATCTTAAGAACAAATTGCATGAACTATTCCAAATAGAGCAGCAACGTGCTTTGGCAGCAGGAGTGAGATACCCTCTGCAGCAGAATCAATGA 441 0.4535 MNRLLAFLFHQGVLDAQFLQLQQLQDETSPNFLSEVVNIYFHESEKLLRNLRGLLMEREFSDYKKIGKHLNQFMGSSSSIGAKRVTSVCIAFRAATDHNNRAGCLRALEMLEQEYCYLKNKLHELFQIEQQRALAAGVRYPLQQNQ* 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g5207 146 ProSiteProfiles Histidine-containing phosphotransfer (HPt) domain profile. 29 125 IPR008207 GO:0000160
Lja3g5207 146 Pfam Hpt domain 35 117 IPR008207 GO:0000160
Lja3g5207 146 Gene3D HPT domain 1 144 IPR036641 GO:0000160
Lja3g5207 146 PANTHER - 1 140 IPR045871 GO:0000160|GO:0009927|GO:0043424
Lja3g5207 146 PANTHER PSEUDO HISTIDINE-CONTAINING PHOSPHOTRANSFER PROTEIN 6 1 140 - -
Lja3g5207 146 SUPERFAMILY Histidine-containing phosphotransfer domain, HPT domain 6 131 IPR036641 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g5207 Lja-Chr3 94370240 94371229 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g5207 K14490 - gmx:100789608 254.988
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g5207 3 94370240 94371229 Lja3g5207 3 94370240 94371229 ECH
Lja3g5207 3 94370240 94371229 Lja3g2149 3 25169420 25170346 PCT